Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 1.1e-21 105.5 48 100.0
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 1.7e-17 91.7 46 87.0
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 1.4e-16 88.6 45 88.9
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 3.2e-16 87.4 46 84.8
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 3.2e-16 87.4 45 86.7
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 3.2e-16 87.4 45 86.7
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 4.2e-16 87.0 45 84.4
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 7.1e-16 86.3 45 84.4
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 9.3e-16 85.9 45 84.4
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 9.3e-16 85.9 45 84.4
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 9.3e-16 85.9 45 84.4
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 9.3e-16 85.9 45 84.4
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.2e-15 85.5 45 84.4
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.2e-15 85.5 45 84.4
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.2e-15 85.5 45 84.4
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.2e-15 85.5 45 84.4
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 1.2e-15 85.5 45 86.7
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.2e-15 85.5 45 86.7
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.6e-15 85.1 45 84.4
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.6e-15 85.1 45 84.4
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 1.6e-15 85.1 45 84.4
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 1.6e-15 85.1 45 86.7
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 1.6e-15 85.1 45 84.4
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.1e-15 84.7 45 82.2
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 2.1e-15 84.7 45 84.4
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 2.1e-15 84.7 45 86.7
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.7e-15 84.3 45 82.2
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 2.7e-15 84.3 45 84.4
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 2.7e-15 84.3 45 82.2
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 2.7e-15 84.3 45 82.2
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 2.7e-15 84.3 45 82.2
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 2.7e-15 84.3 45 80.0
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 2.7e-15 84.3 45 82.2
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 2.7e-15 84.3 45 82.2
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 2.7e-15 84.3 45 84.4
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 3.5e-15 84.0 45 84.4
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 3.5e-15 84.0 45 80.0
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 3.5e-15 84.0 45 82.2
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 3.5e-15 84.0 45 84.4
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 3.5e-15 84.0 45 82.2
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 3.5e-15 84.0 45 84.4
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 3.5e-15 84.0 45 84.4
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 4.6e-15 83.6 45 80.0
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 4.6e-15 83.6 45 82.2
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 4.6e-15 83.6 45 82.2
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 4.6e-15 83.6 45 84.4
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.6e-15 83.6 45 82.2
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.6e-15 83.6 45 82.2
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 4.6e-15 83.6 45 82.2
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 4.6e-15 83.6 44 84.1
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 6.0e-15 83.2 45 80.0
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 7.9e-15 82.8 45 82.2
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 1.0e-14 82.4 43 86.0
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 1.3e-14 82.0 45 80.0
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 1.3e-14 82.0 45 80.0
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 1.8e-14 81.6 45 77.8
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.8e-14 81.6 45 77.8
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 1.8e-14 81.6 46 84.8
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.8e-14 81.6 45 82.2
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 2.3e-14 81.3 46 82.6
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 2.3e-14 81.3 43 83.7
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 2.3e-14 81.3 43 83.7
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 3.0e-14 80.9 45 80.0
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 3.0e-14 80.9 45 80.0
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 3.0e-14 80.9 44 79.5
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 3.0e-14 80.9 45 75.6
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 3.9e-14 80.5 43 83.7
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 3.9e-14 80.5 43 83.7
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 3.9e-14 80.5 43 83.7
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 5.1e-14 80.1 44 81.8
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 5.1e-14 80.1 44 81.8
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 5.1e-14 80.1 45 75.6
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 5.1e-14 80.1 45 75.6
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 5.1e-14 80.1 45 75.6
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 5.1e-14 80.1 45 75.6
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 6.7e-14 79.7 45 75.6
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 6.7e-14 79.7 45 77.8
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 6.7e-14 79.7 45 75.6
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 6.7e-14 79.7 45 75.6
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 6.7e-14 79.7 45 75.6
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 6.7e-14 79.7 45 75.6
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 6.7e-14 79.7 45 75.6
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 6.7e-14 79.7 45 75.6
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 6.7e-14 79.7 45 75.6
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 6.7e-14 79.7 45 75.6
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 6.7e-14 79.7 45 80.0
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 6.7e-14 79.7 45 80.0
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 6.7e-14 79.7 45 75.6
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 8.7e-14 79.3 41 87.8
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 8.7e-14 79.3 41 87.8
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 8.7e-14 79.3 45 75.6
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 1.1e-13 79.0 45 75.6
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 1.1e-13 79.0 45 73.3
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 1.5e-13 78.6 43 81.4
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 1.5e-13 78.6 44 79.5
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 1.9e-13 78.2 45 73.3
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 1.9e-13 78.2 45 73.3
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 1.9e-13 78.2 45 73.3
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 1.9e-13 78.2 43 81.4
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 3.3e-13 77.4 45 73.3
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 4.3e-13 77.0 44 75.0
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 4.3e-13 77.0 45 75.6
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 4.3e-13 77.0 46 76.1
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 4.3e-13 77.0 43 76.7
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 4.3e-13 77.0 45 73.3
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 4.3e-13 77.0 41 85.4
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 5.6e-13 76.6 45 71.1
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 5.6e-13 76.6 45 71.1
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 5.6e-13 76.6 45 73.3
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 7.4e-13 76.3 45 77.8
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 9.6e-13 75.9 41 82.9
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 9.6e-13 75.9 45 68.9
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 2.1e-12 74.7 45 68.9
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 2.1e-12 74.7 44 70.5
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 2.8e-12 74.3 45 68.9
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 3.7e-12 73.9 42 73.8
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 3.7e-12 73.9 46 76.1
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 4.8e-12 73.6 39 84.6
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 4.8e-12 73.6 39 84.6
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 8.1e-12 72.8 39 84.6
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 1.1e-11 72.4 41 80.5
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 1.8e-11 71.6 41 73.2
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 6.9e-11 69.7 43 69.8
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 9.0e-11 69.3 70 52.9
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 1.2e-10 68.9 40 72.5
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 5.8e-10 66.6 41 65.9
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 2.9e-09 64.3 45 60.0
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 2.9e-09 64.3 45 60.0
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 2.9e-09 64.3 39 66.7
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 3.8e-09 63.9 40 72.5
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 4.2e-08 60.5 59 54.2
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 6.0e-07 56.6 40 70.0


User provided reference genes

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