Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 4.6e-146 521.2 255 100.0
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 1.8e-137 492.7 255 92.9
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 3.8e-132 474.9 255 89.0
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 4.9e-132 474.6 255 89.8
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 3.2e-131 471.9 255 88.6
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 3.0e-129 465.3 255 86.7
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 8.7e-129 463.8 255 87.1
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 1.1e-128 463.4 255 87.5
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 1.1e-128 463.4 255 86.7
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 2.5e-128 462.2 255 86.7
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 4.3e-128 461.5 253 87.0
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 5.6e-128 461.1 255 86.7
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 7.4e-128 460.7 255 86.3
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.3e-127 459.9 257 86.8
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.6e-127 459.5 256 87.1
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 2.1e-127 459.1 255 87.1
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 6.2e-127 457.6 255 85.9
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 1.8e-126 456.1 255 85.5
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.4e-126 455.7 255 85.5
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 3.1e-126 455.3 255 85.5
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 3.1e-126 455.3 255 84.7
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 4.0e-126 454.9 255 84.3
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 4.0e-126 454.9 255 85.9
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.0e-126 454.9 255 85.1
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 5.3e-126 454.5 255 85.5
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 5.3e-126 454.5 255 85.1
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 5.3e-126 454.5 255 87.1
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 1.2e-125 453.4 255 84.7
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 1.2e-125 453.4 255 84.7
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.2e-125 453.4 255 84.3
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 1.2e-125 453.4 253 86.2
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 83.9
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 84.3
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 83.9
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 3.4e-125 451.8 256 85.5
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 4.5e-125 451.4 255 85.5
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 5.8e-125 451.1 255 85.5
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 5.8e-125 451.1 255 85.1
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.0e-124 450.3 255 83.5
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 1.3e-124 449.9 255 85.5
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 1.3e-124 449.9 256 84.0
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 2.2e-124 449.1 255 83.9
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 2.9e-124 448.7 256 84.0
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 3.8e-124 448.4 255 84.3
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 3.8e-124 448.4 255 83.5
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 3.8e-124 448.4 255 83.5
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 8.4e-124 447.2 255 83.5
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.1e-123 446.8 255 84.3
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 2.5e-123 445.7 255 82.7
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 3.2e-123 445.3 255 83.9
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 3.2e-123 445.3 256 83.2
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 7.1e-123 444.1 255 83.9
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 9.3e-123 443.7 255 83.9
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 9.3e-123 443.7 256 84.0
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 1.2e-122 443.4 253 85.4
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 1.2e-122 443.4 255 83.5
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 1.6e-122 443.0 255 83.5
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 2.1e-122 442.6 255 83.1
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 2.1e-122 442.6 255 85.1
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 2.7e-122 442.2 258 82.6
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 2.7e-122 442.2 255 82.7
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 3.5e-122 441.8 255 84.3
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 1.0e-121 440.3 255 83.5
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 1.3e-121 439.9 253 84.6
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 1.3e-121 439.9 253 84.6
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 1.3e-121 439.9 255 83.5
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 1.8e-121 439.5 255 82.7
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 2.3e-121 439.1 253 84.2
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 2.3e-121 439.1 255 83.5
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.3e-121 439.1 254 81.9
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 3.0e-121 438.7 255 82.4
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 3.9e-121 438.3 253 82.6
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 3.9e-121 438.3 255 82.4
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 3.9e-121 438.3 254 81.5
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 5.1e-121 438.0 256 83.6
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 5.1e-121 438.0 256 83.2
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 5.1e-121 438.0 256 83.6
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 5.1e-121 438.0 255 82.4
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 5.1e-121 438.0 254 81.5
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 6.7e-121 437.6 256 83.2
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 6.7e-121 437.6 256 83.6
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 8.7e-121 437.2 253 84.6
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 8.7e-121 437.2 257 80.9
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 1.1e-120 436.8 256 83.2
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 1.1e-120 436.8 256 82.8
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 1.5e-120 436.4 256 83.2
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 1.5e-120 436.4 253 83.8
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.5e-120 436.4 257 80.5
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 1.5e-120 436.4 255 81.6
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 1.5e-120 436.4 255 83.1
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 3.3e-120 435.3 255 82.4
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 4.3e-120 434.9 255 82.0
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 9.7e-120 433.7 253 81.0
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 2.2e-119 432.6 255 80.4
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 2.8e-119 432.2 256 83.2
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 4.8e-119 431.4 253 83.4
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 6.3e-119 431.0 306 70.9
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 8.2e-119 430.6 256 82.0
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 8.2e-119 430.6 253 79.8
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.4e-118 429.9 262 80.9
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.4e-118 429.9 255 80.0
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 3.1e-118 428.7 253 83.4
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 3.1e-118 428.7 253 83.4
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 9.0e-118 427.2 256 80.1
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.0e-116 423.7 255 78.8
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 3.8e-116 421.8 255 81.2
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 2.1e-114 416.0 255 79.2
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 2.3e-113 412.5 233 82.0
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 3.0e-113 412.1 283 72.4
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 8.8e-113 410.6 238 80.3
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 2.0e-112 409.5 240 83.8
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 7.4e-112 407.5 294 70.4
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 6.3e-111 404.4 240 82.1
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 5.5e-107 391.3 237 77.2
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 1.6e-106 389.8 267 73.0
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 2.1e-106 389.4 219 84.0
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 1.4e-105 386.7 260 74.6
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 5.7e-104 381.3 229 76.9
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.3e-103 380.2 260 73.1
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.5e-101 373.2 232 75.0
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 3.5e-101 372.1 260 72.7
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 4.5e-101 371.7 255 73.7
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 5.9e-101 371.3 253 69.6
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.9e-99 366.3 240 72.1
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 2.5e-99 365.9 202 84.2
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 4.2e-99 365.2 250 69.6
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 1.2e-98 363.6 255 71.4
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 1.2e-98 363.6 319 60.8
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 4.7e-98 361.7 249 69.5
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 1.1e-96 357.1 230 71.7
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 9.4e-91 337.4 240 72.1
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 4.5e-85 318.5 250 66.8
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 1.2e-82 310.5 162 90.7
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 8.0e-82 307.8 160 89.4
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 1.3e-79 300.4 162 85.2
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 2.2e-79 299.7 248 57.3
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 7.7e-77 291.2 158 88.6
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 5.5e-75 285.0 201 70.6
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 1.4e-73 280.4 285 56.5
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 5.2e-73 278.5 162 84.0
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 1.5e-72 276.9 234 53.0
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 2.0e-72 276.6 171 79.5
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.3e-60 237.3 268 51.9
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 5.2e-57 225.3 135 79.3
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 1.5e-56 223.8 117 90.6
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 1.2e-53 214.2 116 87.9
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 8.6e-52 208.0 232 46.1
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 3.7e-47 192.6 101 91.1
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 2.1e-45 186.8 121 76.0
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.0e-44 184.5 109 81.7
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 1.5e-43 180.6 165 60.0
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 5.8e-40 168.7 211 43.6
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 1.1e-38 164.5 84 88.1
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 9.3e-38 161.4 83 86.7
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.7e-37 159.8 89 83.1
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.3e-36 157.5 83 86.7
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 5.6e-35 152.1 89 79.8
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.3e-34 151.0 89 78.7
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 3.6e-34 149.4 100 72.0
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.8e-33 147.1 75 89.3
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.8e-33 147.1 89 77.5
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.3e-31 141.0 81 81.5
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.2e-31 140.2 81 81.5
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 2.4e-30 136.7 90 75.6
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.1e-30 135.2 75 82.7
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.1e-30 135.2 75 82.7
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.1e-30 135.2 75 82.7
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.1e-30 135.2 75 82.7
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 9.3e-30 134.8 81 77.8
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.7e-29 133.3 75 81.3
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 3.0e-28 129.8 84 75.0
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 8.7e-28 128.3 75 78.7
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.6e-26 124.0 76 77.6
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.1e-26 123.6 71 81.7
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 1.5e-24 117.5 84 71.4
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 4.8e-10 69.3 41 78.0
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 2.4e-09 67.0 49 61.2
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 5.5e-06 55.8 29 89.7


User provided reference genes

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