Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 5.4e-145 517.7 269 100.0
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 3.0e-79 299.3 268 65.3
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 6.3e-77 291.6 266 62.4
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 7.6e-75 284.6 225 68.0
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 1.9e-73 280.0 184 75.5
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 5.5e-73 278.5 179 79.3
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 7.2e-73 278.1 179 79.3
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 1.2e-72 277.3 184 77.2
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 4.6e-72 275.4 231 67.1
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 6.1e-72 275.0 245 61.2
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 6.1e-72 275.0 248 60.9
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 3.0e-71 272.7 180 75.6
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 3.9e-71 272.3 207 68.6
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 3.9e-71 272.3 182 75.8
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 3.9e-71 272.3 271 59.0
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 5.1e-71 271.9 176 78.4
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 6.7e-71 271.6 178 77.0
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 8.7e-71 271.2 273 59.0
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 8.7e-71 271.2 207 68.6
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 1.1e-70 270.8 182 75.8
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 1.1e-70 270.8 178 77.5
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 4.3e-70 268.9 268 59.0
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 5.7e-70 268.5 273 56.4
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 7.4e-70 268.1 271 57.2
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 9.7e-70 267.7 275 56.4
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 1.6e-69 266.9 231 61.0
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 2.2e-69 266.5 204 67.2
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 3.7e-69 265.8 275 57.5
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 4.8e-69 265.4 271 56.5
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 6.3e-69 265.0 180 73.9
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 8.2e-69 264.6 183 74.3
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 1.8e-68 263.5 181 73.5
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.8e-68 263.5 274 56.2
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 3.1e-68 262.7 176 74.4
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 6.9e-68 261.5 186 74.7
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 1.2e-67 260.8 302 52.6
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 1.2e-67 260.8 281 55.2
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 1.2e-67 260.8 204 67.6
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 1.5e-67 260.4 181 72.9
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 2.6e-67 259.6 270 55.9
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 3.4e-67 259.2 202 68.8
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 4.5e-67 258.8 271 56.5
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 5.9e-67 258.5 175 74.9
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 7.7e-67 258.1 236 61.0
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 1.3e-66 257.3 181 74.0
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 3.8e-66 255.8 203 64.5
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 3.8e-66 255.8 182 72.5
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 6.5e-66 255.0 233 61.8
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 1.9e-65 253.4 178 71.3
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 2.1e-64 250.0 188 69.7
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 4.6e-64 248.8 181 71.3
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 1.0e-63 247.7 171 71.9
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 1.4e-63 247.3 186 70.4
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 1.4e-63 247.3 268 54.1
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 1.8e-63 246.9 268 54.1
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 2.3e-63 246.5 186 70.4
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 2.6e-62 243.0 282 51.4
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 4.4e-62 242.3 280 52.1
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 4.4e-62 242.3 181 70.7
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 4.4e-62 242.3 183 71.0
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 5.7e-62 241.9 185 68.1
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 7.4e-62 241.5 185 68.1
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 7.4e-62 241.5 185 68.1
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 7.4e-62 241.5 185 68.1
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 9.7e-62 241.1 182 68.7
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 1.3e-61 240.7 166 72.9
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 1.7e-61 240.4 282 52.1
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 2.2e-61 240.0 181 70.7
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.8e-61 239.6 170 72.4
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 6.3e-61 238.4 171 70.8
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 6.3e-61 238.4 170 71.8
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 2.6e-59 233.0 275 50.9
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 7.7e-59 231.5 243 56.8
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 2.2e-58 229.9 205 61.5
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 2.2e-58 229.9 168 68.5
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 3.8e-58 229.2 167 70.1
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 6.5e-58 228.4 155 72.9
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 9.4e-57 224.6 163 68.7
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 1.2e-56 224.2 148 75.0
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 2.3e-55 219.9 146 74.7
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 3.3e-54 216.1 154 69.5
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 5.7e-54 215.3 241 51.9
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 5.7e-54 215.3 169 66.3
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 1.8e-52 210.3 147 74.8
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 4.2e-49 199.1 121 83.5
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 2.1e-48 196.8 147 66.0
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 3.6e-48 196.1 122 81.1
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 1.4e-47 194.1 224 49.1
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 8.8e-47 191.4 150 65.3
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 8.8e-47 191.4 269 47.6
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 3.3e-46 189.5 146 65.8
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 1.3e-45 187.6 184 58.2
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.2e-45 186.8 169 60.4
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 1.8e-44 183.7 192 54.2
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 3.5e-43 179.5 187 54.0
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 4.0e-39 166.0 194 51.0
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 1.7e-37 160.6 173 54.3
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.1e-36 157.9 158 53.8
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 1.3e-34 151.0 167 53.3
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 1.2e-30 137.9 146 49.3
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 1.3e-29 134.4 103 65.0
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 8.3e-29 131.7 125 57.6
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 1.1e-28 131.3 88 72.7
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 5.4e-28 129.0 144 54.2
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 9.2e-28 128.3 117 63.2
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 1.9e-25 120.6 144 52.8
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 1.9e-25 120.6 77 77.9
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 1.2e-24 117.9 167 49.1
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 8.9e-23 111.7 92 57.6
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 4.4e-22 109.4 84 66.7
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 6.4e-21 105.5 199 38.2
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 1.4e-20 104.4 128 50.8
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 2.4e-20 103.6 184 40.2
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 2.0e-19 100.5 72 69.4
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 6.6e-18 95.5 71 77.5
AUR62042806 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.2e-16 91.3 120 51.7
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.8e-15 87.4 155 43.2
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 6.8e-15 85.5 65 70.8
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 1.2e-11 74.7 65 55.4
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 7.8e-11 72.0 103 42.7
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 2.8e-08 63.5 55 56.4
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 3.6e-08 63.2 85 41.2
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 8.1e-08 62.0 43 65.1
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 1.1e-07 61.6 47 55.3
AUR62041001 Chenopodium quinoa HOM05D002468 ORTHO05D009172 1.2e-06 58.2 54 63.0


User provided reference genes

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