Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 1.5e-236 822.4 409 100.0
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 7.7e-119 431.4 360 62.2
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 4.2e-117 425.6 360 61.4
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.1e-104 384.4 348 56.9
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 2.6e-98 363.2 368 53.8
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 3.1e-75 286.6 349 45.0
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 5.2e-75 285.8 355 43.7
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 6.8e-75 285.4 349 44.1
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 8.9e-75 285.0 355 43.7
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 7.5e-74 282.0 339 44.8
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 1.9e-72 277.3 358 41.3
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 1.9e-72 277.3 352 43.8
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 3.2e-72 276.6 365 42.2
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 9.2e-72 275.0 358 41.9
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 1.2e-71 274.6 356 43.0
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 1.6e-71 274.2 352 41.8
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 7.8e-71 271.9 347 43.2
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 6.6e-70 268.9 351 41.0
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 6.6e-70 268.9 347 42.1
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 4.7e-68 262.7 353 39.9
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 1.1e-67 261.5 356 41.3
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 1.8e-67 260.8 360 41.9
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 3.1e-67 260.0 352 41.5
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 5.2e-67 259.2 355 40.6
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 5.2e-67 259.2 356 40.7
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 6.8e-67 258.8 352 41.2
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 8.9e-67 258.5 350 42.0
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 1.2e-66 258.1 356 40.4
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 2.0e-66 257.3 358 40.2
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 2.0e-66 257.3 350 40.6
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 3.4e-66 256.5 355 40.8
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 9.9e-66 255.0 348 40.8
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 1.3e-65 254.6 348 40.8
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 1.3e-65 254.6 345 39.4
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 2.9e-65 253.4 354 38.7
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 8.3e-65 251.9 356 39.9
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.4e-64 250.4 357 39.2
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 2.4e-64 250.4 367 36.8
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 3.2e-64 250.0 357 39.8
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 3.2e-64 250.0 357 39.8
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 5.4e-64 249.2 357 38.9
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 5.4e-64 249.2 349 39.0
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 7.1e-64 248.8 355 39.4
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 1.2e-63 248.1 351 40.2
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 1.2e-63 248.1 350 38.6
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 1.6e-63 247.7 356 39.0
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 3.5e-63 246.5 348 38.5
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 3.5e-63 246.5 354 37.9
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 6.0e-63 245.7 351 39.0
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 1.0e-62 245.0 356 38.2
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 1.0e-62 245.0 358 39.1
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 3.9e-62 243.0 349 37.2
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 5.1e-62 242.7 357 38.1
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 1.1e-61 241.5 354 38.4
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 1.5e-61 241.1 349 38.4
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 1.5e-61 241.1 355 41.7
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 1.9e-61 240.7 350 37.4
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 3.3e-61 240.0 357 39.5
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 7.3e-61 238.8 359 39.3
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 7.3e-61 238.8 356 39.3
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 1.6e-60 237.7 355 38.3
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.1e-60 237.3 357 37.3
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.8e-60 236.9 348 38.2
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 2.8e-60 236.9 355 38.3
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 8.1e-60 235.3 355 38.6
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 1.8e-59 234.2 362 37.3
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 1.8e-59 234.2 348 40.5
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 5.2e-59 232.6 347 36.6
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 8.9e-59 231.9 349 37.5
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 1.5e-58 231.1 355 37.2
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 1.5e-58 231.1 355 37.2
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 2.6e-58 230.3 355 35.8
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 2.6e-58 230.3 354 35.3
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 5.8e-58 229.2 354 35.9
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 5.8e-58 229.2 353 36.0
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 7.6e-58 228.8 359 36.5
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 9.9e-58 228.4 342 39.2
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 1.7e-57 227.6 352 36.1
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 3.8e-57 226.5 328 38.1
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 1.4e-56 224.6 355 36.3
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 9.3e-56 221.9 355 36.1
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 9.3e-56 221.9 355 36.1
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 9.3e-56 221.9 357 37.0
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 1.6e-55 221.1 326 37.4
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 2.1e-55 220.7 354 37.6
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 6.0e-55 219.2 304 38.8
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 1.0e-54 218.4 355 36.1
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 1.7e-54 217.6 349 37.8
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 5.6e-53 212.6 354 33.6
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 5.6e-53 212.6 352 37.5
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 5.8e-50 202.6 356 33.4
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 1.3e-49 201.4 363 33.3
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 1.7e-49 201.1 353 35.7
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 3.2e-48 196.8 366 36.1
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 3.2e-48 196.8 354 33.1
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 3.2e-48 196.8 356 34.3
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 1.6e-47 194.5 355 33.5
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 2.1e-47 194.1 351 35.6
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.1e-44 184.1 277 38.3
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 2.6e-42 177.2 345 31.9
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 4.9e-41 172.9 353 30.6
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 7.9e-39 165.6 348 29.3
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 3.1e-35 153.7 318 33.6
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 7.1e-32 142.5 159 47.2
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 3.4e-26 123.6 354 26.6
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 1.0e-22 112.1 351 25.6
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 1.5e-21 108.2 151 41.7
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 1.9e-21 107.8 273 29.3
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 3.3e-21 107.1 159 38.4
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.0e-17 95.5 365 26.8
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 6.1e-15 86.3 88 43.2
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 1.8e-14 84.7 166 33.1
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.4e-11 75.1 101 39.6
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.8e-11 74.7 153 26.1
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 7.7e-10 69.3 80 42.5
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 5.0e-09 66.6 79 41.8
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 3.9e-06 57.0 61 49.2


User provided reference genes

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