Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 2.7e-291 1004.6 496 100.0
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 8.1e-272 939.9 496 93.5
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 4.9e-269 930.6 496 92.5
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.0e-258 894.8 496 87.9
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 4.9e-253 877.5 477 89.5
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.7e-250 869.0 534 81.5
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 2.5e-249 865.1 493 84.8
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 5.6e-249 864.0 494 85.0
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 1.5e-246 855.9 493 84.0
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 4.5e-246 854.4 496 83.9
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 9.9e-246 853.2 488 85.5
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 3.8e-245 851.3 487 85.0
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 4.9e-245 850.9 494 84.4
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 6.4e-245 850.5 493 83.4
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 8.4e-245 850.1 493 83.6
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.4e-244 849.4 493 84.4
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 5.5e-244 847.4 493 84.0
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 9.3e-244 846.7 493 83.2
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.2e-243 846.3 494 83.6
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 1.2e-243 846.3 494 83.6
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.6e-243 845.9 493 83.0
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.5e-243 844.7 491 83.5
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 6.0e-243 844.0 493 83.4
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.0e-242 843.2 491 83.5
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.0e-242 843.2 494 83.4
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 1.3e-242 842.8 494 83.0
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 3.0e-242 841.6 493 83.4
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 3.9e-242 841.3 494 83.2
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 3.9e-242 841.3 494 83.2
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 5.1e-242 840.9 494 83.4
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.1e-241 839.7 494 83.8
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.5e-241 839.3 500 83.0
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 4.3e-241 837.8 493 82.8
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.3e-241 837.8 491 83.1
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 5.6e-241 837.4 494 83.6
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 7.4e-241 837.0 494 83.0
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.3e-240 836.3 493 82.6
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 1.3e-240 836.3 493 82.4
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 2.1e-240 835.5 494 82.6
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 3.7e-240 834.7 491 83.3
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 3.7e-240 834.7 496 81.5
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 4.8e-240 834.3 495 82.6
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 8.1e-240 833.6 494 83.0
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 8.1e-240 833.6 494 82.4
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 1.1e-239 833.2 495 83.0
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 1.8e-239 832.4 493 82.6
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 2.4e-239 832.0 496 82.3
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 2.4e-239 832.0 527 79.1
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 3.1e-239 831.6 493 83.2
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 4.0e-239 831.2 494 82.2
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 4.0e-239 831.2 499 81.2
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 5.3e-239 830.9 496 81.9
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 2.0e-238 828.9 496 81.5
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 4.5e-238 827.8 493 82.4
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 7.6e-238 827.0 488 82.4
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 7.6e-238 827.0 487 83.0
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 7.6e-238 827.0 490 82.4
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 7.6e-238 827.0 489 82.4
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.6e-238 827.0 494 81.8
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.0e-237 826.6 496 81.9
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 1.7e-237 825.9 505 80.0
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 2.2e-237 825.5 490 82.9
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 2.9e-237 825.1 488 83.0
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 2.9e-237 825.1 501 81.4
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 6.5e-237 823.9 488 82.8
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 8.4e-237 823.5 490 82.7
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 8.4e-237 823.5 493 82.2
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 1.1e-236 823.2 490 82.2
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.4e-236 822.8 494 81.8
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 1.4e-236 822.8 490 82.0
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 2.5e-236 822.0 490 82.7
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.2e-236 821.6 494 81.2
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 3.2e-236 821.6 509 79.8
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 4.2e-236 821.2 493 81.3
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 5.5e-236 820.8 493 82.2
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.1e-235 818.9 490 81.2
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 2.1e-235 818.9 493 81.7
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 2.7e-235 818.5 491 82.1
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 3.5e-235 818.1 497 81.5
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 4.6e-235 817.8 490 81.4
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 4.6e-235 817.8 489 81.2
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 4.6e-235 817.8 493 80.3
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 7.9e-235 817.0 480 82.3
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.9e-235 817.0 494 80.6
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.0e-234 816.6 497 80.3
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 1.8e-234 815.8 498 80.9
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.8e-234 815.8 493 81.7
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 2.3e-234 815.5 487 81.9
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.9e-234 814.7 494 81.0
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 5.1e-234 814.3 494 81.2
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 8.7e-234 813.5 493 80.3
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 8.7e-234 813.5 496 79.0
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 9.6e-233 810.1 489 81.6
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.3e-232 809.7 496 78.8
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.8e-232 808.5 489 81.0
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 2.8e-232 808.5 497 80.3
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 1.4e-231 806.2 493 80.3
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.2e-230 803.1 490 79.8
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 1.3e-229 799.7 493 79.5
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 7.7e-222 773.9 438 85.2
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 1.3e-221 773.1 491 77.2
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.4e-218 763.1 488 76.6
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.4e-218 763.1 521 73.7
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.8e-218 762.7 492 76.2
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 2.8e-216 755.4 438 83.8
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 2.4e-215 752.3 444 81.8
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 3.8e-213 745.0 442 82.4
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 5.0e-213 744.6 445 82.5
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 6.5e-213 744.2 492 74.4
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.1e-207 726.9 442 81.0
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 4.1e-207 724.9 442 81.9
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 5.3e-207 724.5 493 72.0
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 9.1e-199 697.2 486 68.3
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.2e-198 696.8 485 70.9
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 2.5e-196 689.1 383 87.2
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.2e-188 661.8 491 68.8
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 9.5e-188 660.6 405 79.0
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.8e-186 656.4 471 71.3
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 1.5e-185 653.3 496 69.4
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.6e-182 643.3 383 82.2
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 4.4e-177 625.2 506 62.6
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 5.9e-174 614.8 498 65.5
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.1e-171 606.3 384 78.4
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 7.0e-167 591.3 391 75.7
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 9.2e-159 564.3 382 74.6
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.9e-156 556.6 463 65.2
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 9.5e-156 554.3 345 79.7
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 4.3e-148 528.9 528 51.3
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.5e-134 482.6 266 87.6
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.9e-124 450.3 456 52.9
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 3.5e-118 429.5 245 84.1
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 5.3e-114 415.6 245 80.4
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.9e-108 397.1 301 67.4
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 6.3e-107 392.1 238 76.9
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.4e-106 391.0 228 83.8
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 2.6e-105 386.7 252 75.8
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 7.7e-105 385.2 482 47.3
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.0e-104 384.8 437 50.3
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 9.1e-98 361.7 303 66.0
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.4e-95 354.4 237 74.3
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.7e-89 332.0 311 58.8
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.6e-86 324.3 236 68.2
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 2.2e-80 303.9 253 65.6
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 8.3e-59 232.3 158 73.4
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 3.9e-56 223.4 260 50.0
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 1.2e-54 218.4 148 70.9
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 4.7e-54 216.5 291 47.8
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 5.6e-47 193.0 146 66.4
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 2.1e-46 191.0 103 86.4
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 2.0e-44 184.5 96 89.6
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 5.8e-44 183.0 104 82.7
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 5.8e-44 183.0 151 65.6
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 1.5e-39 168.3 122 67.2
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 4.1e-34 150.2 129 59.7
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 2.3e-32 144.4 161 50.9
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 4.3e-31 140.2 75 88.0
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 4.7e-30 136.7 79 79.7
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 2.0e-28 131.3 85 76.5
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 4.2e-18 97.1 93 55.9
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 2.1e-14 84.7 61 73.8
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 1.8e-13 81.6 74 59.5
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.4e-10 71.2 36 86.1
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 3.5e-09 67.4 51 66.7
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 7.4e-07 59.7 44 63.6
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 1.6e-06 58.5 38 76.3
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 2.1e-06 58.2 30 80.0


User provided reference genes

Program Settings