Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 0.0e+00 1783.1 950 100.0
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 0.0e+00 1248.8 955 73.8
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 0.0e+00 1198.7 946 71.8
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 0.0e+00 1159.1 953 68.0
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.1e-301 1040.0 954 62.8
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 3.2e-261 905.6 928 59.6
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 7.5e-234 814.7 1046 50.4
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.8e-212 743.0 923 50.8
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.9e-206 722.6 932 49.7
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 8.1e-204 714.9 939 50.2
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 8.4e-201 704.9 939 49.7
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.4e-200 703.4 910 48.8
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 3.2e-200 703.0 920 49.8
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 3.5e-199 699.5 957 48.1
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.7e-198 697.2 901 49.1
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 2.3e-198 696.8 943 48.8
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 5.6e-197 692.2 840 50.5
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 1.6e-196 690.6 910 49.8
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.0e-194 683.7 916 48.7
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 3.4e-194 682.9 888 49.5
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 3.4e-194 682.9 1005 45.3
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 1.3e-193 681.0 930 47.6
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.3e-193 681.0 1044 44.8
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 3.8e-193 679.5 930 48.4
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 3.8e-193 679.5 943 47.8
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 3.2e-192 676.4 923 48.6
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 9.3e-192 674.9 931 48.3
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 2.1e-191 673.7 933 48.2
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.9e-190 669.5 928 47.8
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 1.5e-189 667.5 900 48.3
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.5e-189 667.5 927 47.7
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.3e-189 666.0 926 47.4
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.6e-188 664.1 920 47.3
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.1e-188 663.7 920 47.2
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 2.1e-188 663.7 949 47.1
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.1e-188 663.7 927 48.0
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.8e-188 662.5 929 47.5
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 9.3e-184 648.3 932 47.4
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.3e-182 644.4 945 45.7
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.0e-182 643.3 898 48.0
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.9e-181 640.6 917 45.7
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 5.6e-181 639.0 916 46.4
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.6e-180 637.5 878 46.4
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 2.8e-180 636.7 917 47.0
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 8.1e-180 635.2 914 45.6
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 3.1e-179 633.3 942 45.2
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 4.0e-179 632.9 942 47.0
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 4.0e-179 632.9 937 44.7
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.0e-177 628.2 914 47.7
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.3e-177 627.9 943 43.5
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 2.9e-177 626.7 892 47.5
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.9e-176 624.0 930 45.4
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 5.5e-176 622.5 940 44.9
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.7e-175 620.2 903 46.8
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.5e-175 619.8 941 43.1
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 1.0e-174 618.2 665 57.1
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.8e-174 617.5 905 47.4
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.5e-173 614.4 945 46.5
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.5e-173 613.6 896 44.2
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.3e-173 613.2 864 44.8
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 8.2e-172 608.6 932 45.8
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.1e-171 608.2 958 45.0
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.8e-171 607.4 877 46.2
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 4.1e-171 606.3 843 46.4
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.5e-170 604.4 774 50.4
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-170 604.4 940 43.0
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.0e-170 604.0 864 44.4
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 2.6e-170 603.6 917 44.5
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 3.8e-169 599.7 920 44.6
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 8.4e-169 598.6 907 45.6
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 9.3e-168 595.1 915 45.8
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.2e-167 594.7 843 45.9
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 3.0e-166 590.1 936 42.6
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.7e-166 588.6 897 45.5
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 5.3e-163 579.3 924 45.2
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 6.9e-163 578.9 983 42.8
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 5.9e-162 575.9 936 44.4
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.2e-161 573.9 961 44.2
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 1.9e-160 570.9 998 42.8
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 3.6e-159 566.6 985 41.6
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 2.3e-158 563.9 925 45.3
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 4.3e-157 559.7 886 44.9
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.7e-156 557.8 933 43.6
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.4e-155 554.7 948 42.7
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 2.4e-155 553.9 902 44.7
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 2.4e-155 553.9 976 41.1
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.6e-154 550.4 898 44.7
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 3.4e-154 550.1 900 45.0
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.7e-153 547.7 920 44.0
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.9e-153 547.0 931 42.1
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 5.0e-153 546.2 879 44.8
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.1e-152 545.0 922 42.6
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 2.5e-152 543.9 891 44.3
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 9.4e-152 542.0 926 43.4
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 2.1e-151 540.8 923 42.8
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.6e-151 540.0 666 51.2
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 2.8e-148 530.4 870 45.1
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 1.8e-147 527.7 903 42.0
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 4.1e-147 526.6 910 44.1
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 4.1e-147 526.6 900 41.1
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 4.5e-146 523.1 873 43.1
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 3.8e-145 520.0 891 43.5
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.1e-144 518.5 855 45.0
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 2.7e-143 513.8 926 41.9
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 2.3e-142 510.8 928 42.3
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 6.7e-142 509.2 866 40.9
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 3.1e-139 500.4 834 44.2
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.2e-138 498.4 835 43.4
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.7e-137 494.6 582 54.3
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.9e-137 493.8 883 40.9
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 1.1e-136 491.9 887 42.1
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.0e-133 481.1 918 40.2
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.0e-133 481.1 951 40.2
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 3.4e-133 480.3 952 40.0
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 9.8e-133 478.8 831 42.0
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.3e-132 478.4 919 40.7
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 1.2e-130 471.9 917 41.0
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 4.5e-130 469.9 931 40.6
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.0e-129 468.8 931 40.2
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-129 468.0 924 40.5
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 5.0e-129 466.5 942 39.7
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 6.5e-129 466.1 825 41.8
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.1e-128 465.3 959 38.6
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 4.2e-128 463.4 935 39.0
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 4.2e-128 463.4 950 39.8
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 5.5e-128 463.0 950 39.5
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-127 461.8 935 39.9
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.2e-127 461.8 935 39.9
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 5.7e-125 453.0 933 38.8
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 2.2e-124 451.1 928 38.9
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.8e-123 448.0 691 46.9
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.9e-121 440.7 692 43.8
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 2.6e-117 427.6 897 39.6
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 8.3e-116 422.5 902 38.7
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.2e-106 392.1 496 49.4
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.6e-106 390.2 722 43.2
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.3e-105 388.7 782 39.6
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.5e-101 375.2 1007 34.6
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.8e-101 373.2 629 42.8
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 8.3e-100 369.4 892 37.2
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 5.1e-97 360.1 474 49.2
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 8.9e-94 349.4 593 46.0
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.3e-92 345.5 832 36.2
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.3e-89 334.7 549 42.3
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.5e-80 305.4 872 33.4
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 4.8e-79 300.4 995 31.3
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 4.8e-79 300.4 794 33.8
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.9e-76 291.2 434 44.7
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.9e-76 291.2 868 33.2
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.0e-73 282.7 798 32.7
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 7.4e-72 276.6 785 33.6
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 8.4e-68 263.1 285 51.9
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.3e-65 255.8 338 47.9
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.2e-61 242.7 371 45.3
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.9e-59 235.3 711 32.3
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 4.1e-54 217.6 394 41.9
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 2.2e-47 195.3 390 38.7
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 6.9e-46 190.3 222 52.7
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.2e-44 185.3 348 44.8
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 5.5e-43 180.6 271 46.9
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.6e-42 177.9 575 32.5
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.0e-36 159.8 348 39.1
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 1.7e-36 159.1 462 29.2
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 5.0e-36 157.5 111 62.2
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 3.1e-30 138.3 289 38.1
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.5e-24 119.4 253 34.4
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.2e-21 109.8 100 52.0
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 4.5e-21 107.8 196 39.3
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.7e-20 105.9 116 53.4
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.2e-19 101.7 262 33.6
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 5.7e-16 90.9 108 47.2
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 2.2e-15 89.0 118 41.5
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.3e-12 79.0 118 41.5
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.8e-10 72.0 44 72.7
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 6.8e-09 67.4 74 67.6
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.5e-08 66.2 111 39.6
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 2.8e-07 62.0 113 33.6
Hund13661 Selenicereus undatus HOM05D003655 ORTHO05D004065 2.8e-07 62.0 78 60.3
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 8.3e-07 60.5 140 32.9
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 9.2e-06 57.0 96 37.5


User provided reference genes

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