Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 4.3e-286 987.3 483 100.0
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 2.0e-267 925.2 483 92.5
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 6.4e-266 920.2 483 92.3
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 2.4e-265 918.3 483 92.3
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 2.4e-265 918.3 483 92.3
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 4.5e-251 870.9 483 87.0
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 1.3e-234 816.2 483 81.2
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 2.2e-234 815.5 483 81.4
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 3.2e-233 811.6 483 81.0
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 7.2e-233 810.4 483 81.4
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 1.0e-231 806.6 483 81.0
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 3.0e-231 805.1 484 81.4
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 3.0e-231 805.1 484 81.2
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 3.9e-231 804.7 483 81.2
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 3.9e-231 804.7 484 81.2
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 5.2e-231 804.3 483 80.7
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 5.7e-230 800.8 483 79.9
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 7.4e-230 800.4 483 80.1
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 7.4e-230 800.4 482 79.9
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 1.3e-229 799.7 484 80.4
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 2.2e-229 798.9 482 80.3
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 2.8e-229 798.5 483 79.9
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 2.8e-229 798.5 485 79.6
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 4.8e-229 797.7 485 79.4
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 6.3e-229 797.3 483 79.7
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 6.3e-229 797.3 483 80.5
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 8.2e-229 797.0 483 78.9
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 1.1e-228 796.6 482 80.1
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 1.4e-228 796.2 482 78.6
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 2.4e-228 795.4 483 80.1
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 2.4e-228 795.4 482 79.0
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 2.6e-227 792.0 483 80.1
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 7.7e-227 790.4 483 80.1
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 1.3e-226 789.6 484 79.8
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 2.2e-226 788.9 484 77.3
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 3.8e-226 788.1 483 79.7
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 8.5e-226 786.9 482 78.2
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 1.5e-225 786.2 483 78.3
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 2.1e-224 782.3 483 79.7
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 2.1e-224 782.3 484 78.5
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 2.7e-224 781.9 480 78.1
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 3.6e-224 781.6 480 79.0
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 4.7e-224 781.2 483 79.5
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 1.0e-223 780.0 482 77.2
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 1.0e-223 780.0 483 78.9
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 3.0e-223 778.5 488 79.1
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 4.0e-223 778.1 483 78.9
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 6.7e-223 777.3 485 78.6
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 4.4e-222 774.6 483 78.7
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 4.4e-222 774.6 483 77.2
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 5.7e-222 774.2 484 78.1
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 1.3e-221 773.1 481 78.8
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 1.3e-221 773.1 514 74.5
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 1.7e-221 772.7 484 78.1
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 1.7e-221 772.7 479 78.5
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 2.2e-221 772.3 483 77.8
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 2.8e-221 771.9 484 78.9
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 4.8e-221 771.2 481 77.8
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 4.8e-221 771.2 483 77.4
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 4.8e-221 771.2 481 78.6
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.1e-220 770.0 483 77.4
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.4e-220 769.6 483 77.4
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 2.4e-220 768.8 483 77.2
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 3.1e-220 768.5 493 77.1
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 1.2e-219 766.5 487 78.4
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.2e-219 766.5 484 77.9
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 1.2e-219 766.5 484 76.9
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 1.6e-219 766.1 489 77.5
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 1.3e-218 763.1 483 78.1
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 2.2e-218 762.3 481 78.0
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 5.0e-218 761.1 484 77.7
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 6.5e-218 760.8 487 77.6
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 6.5e-218 760.8 482 77.2
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 6.5e-218 760.8 483 77.0
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 1.1e-217 760.0 483 76.8
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 1.9e-217 759.2 417 86.1
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 2.5e-217 758.8 484 76.7
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 5.5e-217 757.7 485 77.3
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 5.5e-217 757.7 485 77.9
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 1.2e-216 756.5 484 76.9
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 1.4e-215 753.1 484 76.9
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 1.8e-215 752.7 484 75.8
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 8.8e-215 750.4 486 78.0
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 4.4e-214 748.0 486 76.3
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 2.2e-213 745.7 484 76.4
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 2.8e-213 745.3 485 75.7
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 3.1e-212 741.9 480 76.7
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 1.2e-211 740.0 488 76.6
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 1.2e-211 740.0 488 76.6
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 6.5e-210 734.2 485 75.7
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 3.3e-209 731.9 391 88.5
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 4.2e-209 731.5 394 88.1
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 1.4e-207 726.5 480 74.8
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 8.9e-207 723.8 485 75.3
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 1.2e-206 723.4 486 73.7
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 2.0e-206 722.6 393 87.5
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 2.6e-206 722.2 480 74.6
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 2.8e-205 718.8 480 74.0
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 1.2e-200 703.4 452 76.1
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 1.7e-197 693.0 445 76.6
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 1.0e-194 683.7 392 79.8
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 4.3e-193 678.3 432 74.8
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 6.2e-192 674.5 404 77.7
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 4.4e-190 668.3 398 79.9
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 4.9e-189 664.8 389 79.2
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 3.5e-187 658.7 480 69.8
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 6.0e-179 631.3 383 79.4
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 1.1e-175 620.5 392 74.7
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 7.1e-172 607.8 431 71.5
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 2.9e-165 585.9 479 64.1
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 7.1e-164 581.3 378 68.8
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 1.0e-162 577.4 399 65.7
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 4.8e-152 542.0 289 88.2
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 6.9e-151 538.1 289 87.5
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 9.3e-140 501.1 342 72.2
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.8e-135 486.9 276 81.2
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.1e-103 381.3 237 78.5
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.9e-100 370.5 264 68.9
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 2.3e-82 310.5 171 83.6
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 6.0e-62 242.7 196 63.3
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 2.1e-59 234.2 136 82.4
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.6e-57 227.3 135 80.0
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 7.6e-57 225.7 130 81.5
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 3.2e-47 193.7 140 70.7
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 6.6e-45 186.0 157 59.9
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 3.1e-34 150.6 94 76.6
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 1.8e-29 134.8 105 62.9
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 1.1e-12 79.0 59 66.1
Nitab4.5_0006775g0100 Nicotiana tabacum HOM05D000776 ORTHO05D001624 1.2e-09 68.9 281 27.0
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 1.5e-09 68.6 155 32.9
Sopen08g030690 Solanum pennellii HOM05D000776 ORTHO05D001624 3.4e-09 67.4 281 26.3
Solyc08g082440.3 Solanum lycopersicum HOM05D000776 ORTHO05D001624 4.5e-09 67.0 281 26.0
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 1.0e-08 65.9 153 32.0
PGSC0003DMG400012274 Solanum tuberosum HOM05D000776 ORTHO05D001624 1.0e-08 65.9 281 26.0
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 1.3e-08 65.5 159 31.4
Ciclev10001690m.g Citrus clementina HOM05D000776 ORTHO05D001624 1.7e-08 65.1 280 26.4
PSO782G1764 Papaver somniferum HOM05D000776 ORTHO05D001624 1.7e-08 65.1 174 29.3
PSO478G2983 Papaver somniferum HOM05D000776 ORTHO05D001624 2.2e-08 64.7 174 28.7
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 3.8e-08 63.9 163 29.4
Nn2g15146 Nelumbo nucifera HOM05D000776 ORTHO05D001624 3.8e-08 63.9 152 32.2
Migut.E01129 Erythranthe guttata HOM05D000776 ORTHO05D001624 6.5e-08 63.2 162 28.4
Potri.006G214000 Populus trichocarpa HOM05D000739 ORTHO05D001171 8.5e-08 62.8 355 22.5
SGA_v2.0_scaffold126G33852 Striga asiatica HOM05D000739 ORTHO05D001171 1.9e-07 61.6 335 23.3
TPR.G12967 Trifolium pratense HOM05D000776 ORTHO05D001624 3.2e-07 60.8 168 28.6
FAN08G0150 Fragaria x ananassa HOM05D000776 ORTHO05D001624 4.2e-07 60.5 174 29.3
Sabra06G0164900 Salix brachista HOM05D000739 ORTHO05D001171 4.2e-07 60.5 333 22.8
CSS0022914 Camellia sinensis var. sinensis HOM05D000776 ORTHO05D001624 5.5e-07 60.1 175 28.6
Ah.12g057480 Amaranthus hybridus HOM05D000776 ORTHO05D001624 9.4e-07 59.3 165 28.5
Peaxi162Scf00074g00745 Petunia axillaris HOM05D000776 ORTHO05D001624 9.4e-07 59.3 134 30.6
SEGI_05924 Sequoiadendron giganteum HOM05D000776 ORTHO05D001624 9.4e-07 59.3 156 28.2
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 1.2e-06 58.9 161 26.7
RcHm_v2.0_Chr3g0467761 Rosa chinensis HOM05D000739 ORTHO05D001171 1.2e-06 58.9 333 21.9
Os09g0526700 Oryza sativa ssp. japonica HOM05D000776 ORTHO05D001624 2.1e-06 58.2 144 29.2
Sc01g0008640 Simmondsia chinensis HOM05D000776 ORTHO05D001624 2.1e-06 58.2 154 28.6
TPR.G5954 Trifolium pratense HOM05D000776 ORTHO05D001624 2.1e-06 58.2 157 28.0
Pp3c14_11550 Physcomitrium patens HOM05D000776 ORTHO05D002281 2.7e-06 57.8 186 28.5
Haze_27503 Corylus avellana HOM05D000776 ORTHO05D002281 6.1e-06 56.6 157 28.7


User provided reference genes

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