Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 0.0e+00 1361.3 1270 100.0
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.6e-135 488.4 1272 58.1
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.1e-135 488.0 1276 55.3
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.3e-129 468.8 1276 55.9
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 2.5e-123 448.0 1191 59.7
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.8e-111 407.1 908 56.6
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.8e-100 370.9 885 62.5
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 7.8e-85 320.1 1191 47.5
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.3e-68 266.2 416 45.4
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 5.0e-68 264.2 1604 43.0
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 1.9e-67 262.3 416 47.8
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 9.5e-67 260.0 419 47.5
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 1.6e-66 259.2 416 47.1
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 4.7e-66 257.7 416 46.6
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 1.8e-65 255.8 493 40.2
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 2.0e-64 252.3 418 44.5
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 1.5e-59 236.1 419 43.7
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 8.1e-58 230.3 1076 27.0
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 1.1e-57 229.9 1076 27.1
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.1e-57 229.9 416 41.1
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 1.4e-57 229.6 419 43.0
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 2.0e-56 225.7 463 37.8
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 1.7e-55 222.6 408 41.4
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 2.2e-55 222.2 416 42.5
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 2.7e-53 215.3 415 41.4
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.9e-51 209.1 335 45.4
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 1.9e-51 209.1 418 40.2
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 3.3e-51 208.4 472 36.2
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 9.6e-51 206.8 416 38.7
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.2e-50 206.5 416 40.1
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 6.2e-50 204.1 416 40.4
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 8.1e-50 203.8 416 40.4
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 9.0e-49 200.3 416 39.2
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 9.9e-48 196.8 416 39.9
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.2e-47 195.7 408 39.0
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 6.4e-47 194.1 415 39.0
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.4e-46 192.2 408 38.2
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 5.4e-46 191.0 417 42.2
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 7.1e-46 190.7 421 38.5
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 9.3e-46 190.3 416 39.9
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 1.6e-45 189.5 407 40.5
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.6e-45 188.0 225 53.3
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.6e-45 188.0 225 53.3
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 1.3e-44 186.4 417 39.8
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 1.7e-44 186.0 1072 24.0
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 5.1e-44 184.5 416 38.0
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 5.1e-44 184.5 408 37.7
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 2.5e-43 182.2 1386 35.7
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 3.3e-43 181.8 470 32.3
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 4.3e-43 181.4 473 33.8
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 2.1e-42 179.1 415 35.2
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 2.8e-42 178.7 416 36.5
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 4.8e-42 177.9 411 33.8
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 1.1e-41 176.8 339 38.6
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 1.8e-41 176.0 1402 36.5
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 2.4e-41 175.6 401 34.4
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 2.4e-41 175.6 416 36.1
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 1.2e-40 173.3 1435 36.7
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 3.4e-40 171.8 1403 35.4
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.7e-39 169.5 409 35.2
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 2.2e-39 169.1 408 36.8
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.9e-38 166.0 415 35.7
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 2.4e-38 165.6 988 25.1
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 9.3e-38 163.7 1513 30.5
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.2e-37 163.3 364 36.0
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 2.7e-37 162.2 415 34.7
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.8e-36 159.5 426 36.4
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 3.0e-36 158.7 415 34.5
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 1.1e-35 156.8 353 36.5
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 5.6e-35 154.5 417 35.7
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 9.6e-35 153.7 416 35.6
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 1.6e-34 152.9 378 35.7
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 6.2e-34 151.0 1402 35.0
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 1.1e-33 150.2 409 33.0
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.4e-33 149.8 1432 34.0
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 6.9e-33 147.5 417 35.0
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 9.0e-33 147.1 421 35.4
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.2e-32 146.7 466 31.8
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 2.0e-32 146.0 416 32.2
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 7.6e-32 144.1 411 30.4
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.7e-31 142.9 417 33.8
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.7e-31 142.9 416 33.4
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 1.4e-30 139.8 344 36.0
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 5.5e-30 137.9 418 35.4
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 7.1e-30 137.5 369 34.7
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 1.2e-29 136.7 415 31.8
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 6.0e-29 134.4 416 32.9
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 7.9e-29 134.0 396 35.6
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 3.9e-28 131.7 333 33.0
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 3.9e-28 131.7 426 32.4
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 1.3e-26 126.7 405 33.1
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.3e-26 126.7 344 34.0
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 1.6e-26 126.3 212 42.0
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 4.8e-26 124.8 442 30.1
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 4.8e-26 124.8 415 30.4
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 6.2e-26 124.4 342 33.6
AUR62043600 Chenopodium quinoa HOM05D003806 ORTHO05D004346 8.2e-26 124.0 165 49.7
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 8.2e-26 124.0 416 33.7
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 1.1e-25 123.6 332 36.1
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.4e-25 123.2 421 34.9
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.4e-25 123.2 421 34.9
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 4.0e-25 121.7 358 31.0
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 6.9e-25 120.9 204 41.7
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 6.9e-25 120.9 415 30.6
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.5e-24 119.8 297 32.7
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 3.4e-24 118.6 527 28.3
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 8.4e-23 114.0 402 34.1
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 1.1e-22 113.6 269 36.4
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 2.1e-21 109.4 228 39.9
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 7.9e-21 107.5 1405 35.1
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 1.0e-20 107.1 242 37.2
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 1.0e-20 107.1 268 35.1
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.3e-20 106.7 415 28.9
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 1.3e-20 106.7 361 32.7
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 1.8e-20 106.3 347 31.4
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 1.1e-19 103.6 294 34.4
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 1.1e-19 103.6 151 41.7
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.5e-19 103.2 180 38.9
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 4.3e-19 101.7 1394 32.8
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 7.4e-19 100.9 207 36.2
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 1.6e-18 99.8 242 36.0
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 2.2e-18 99.4 373 35.1
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 2.8e-18 99.0 229 35.4
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 6.3e-18 97.8 463 28.7
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 3.1e-17 95.5 441 30.4
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 9.0e-17 94.0 385 28.8
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 5.9e-16 91.3 398 26.6
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 1.3e-15 90.1 347 29.7
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 1.3e-15 90.1 347 29.7
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.8e-15 88.6 388 28.4
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 3.8e-15 88.6 410 32.4
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 3.8e-15 88.6 345 29.6
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 5.0e-15 88.2 154 37.0
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 8.5e-15 87.4 401 26.2
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 7.2e-14 84.3 1375 30.5
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 2.7e-13 82.4 415 27.7
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 2.7e-13 82.4 223 32.3
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 3.6e-13 82.0 353 29.5
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 3.6e-13 82.0 414 26.6
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 6.1e-13 81.3 117 50.4
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 7.9e-13 80.9 339 30.4
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 1.4e-12 80.1 239 30.5
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 2.3e-12 79.3 77 61.0
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 6.7e-12 77.8 168 38.1
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 6.7e-12 77.8 182 33.0
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.5e-11 76.6 363 28.9
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 9.7e-11 73.9 225 30.7
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.3e-10 73.6 415 25.1
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 1.7e-10 73.2 336 26.2
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.7e-10 73.2 337 28.2
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 3.7e-10 72.0 90 53.3
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 9.1e-09 67.4 301 27.6
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.0e-08 66.2 157 38.9
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 4.5e-08 65.1 137 33.6
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 4.5e-08 65.1 137 33.6
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 7.7e-08 64.3 92 40.2
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 1.3e-07 63.5 479 26.9
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 1.7e-07 63.2 319 25.1
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.7e-07 63.2 175 30.3
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 2.9e-07 62.4 401 25.9
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 3.2e-06 58.9 247 28.7


User provided reference genes

Program Settings