Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03413 Beta vulgaris HOM05D004952 ORTHO05D006131 0.0e+00 2131.7 1078 100.0
AUR62038364 Chenopodium quinoa HOM05D004952 ORTHO05D006131 0.0e+00 1466.8 1047 73.4
AUR62040965 Chenopodium quinoa HOM05D004952 ORTHO05D006131 0.0e+00 1443.7 1066 71.5
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 0.0e+00 1241.5 1067 61.5
Hund10174 Selenicereus undatus HOM05D004952 ORTHO05D006131 0.0e+00 1200.7 986 64.5
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 0.0e+00 1141.7 1102 56.6
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 0.0e+00 1131.3 1104 57.0
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 0.0e+00 1128.2 1109 56.1
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 0.0e+00 1113.6 1105 55.7
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 0.0e+00 1110.5 1078 56.1
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 0.0e+00 1109.7 1082 56.0
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 0.0e+00 1109.7 1099 55.6
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 0.0e+00 1094.7 1085 54.8
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 0.0e+00 1093.6 1098 54.8
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 0.0e+00 1086.2 1088 55.1
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 0.0e+00 1086.2 1109 54.6
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 0.0e+00 1084.7 1098 55.1
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 0.0e+00 1078.2 1089 54.7
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 0.0e+00 1076.6 1090 55.1
Duzib114G0971 Durio zibethinus HOM05D004952 ORTHO05D006131 0.0e+00 1075.1 1116 53.8
Cpa.g.sc64.8 Carica papaya HOM05D004952 ORTHO05D006131 1.5e-310 1069.7 1074 54.4
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 2.5e-310 1068.9 1095 53.8
Nn6g34572 Nelumbo nucifera HOM05D004952 ORTHO05D006131 1.2e-309 1066.6 1107 53.8
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 6.2e-309 1064.3 1089 54.4
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 1.7e-306 1056.2 1117 52.6
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 2.4e-305 1052.4 1117 52.5
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 4.1e-305 1051.6 1092 54.5
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 7.8e-304 1047.3 1117 52.2
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 3.3e-302 1042.0 1091 53.5
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 4.7e-301 1038.1 1098 53.2
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 6.2e-301 1037.7 1095 53.0
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 2.3e-300 1035.8 1093 53.0
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 8.9e-300 1033.9 1093 52.9
Lj4C49T7 Lonicera japonica HOM05D004952 ORTHO05D006131 3.4e-299 1031.9 1080 53.9
vmacro02786 Vaccinium macrocarpon HOM05D004952 ORTHO05D006131 4.4e-299 1031.6 1090 53.2
Lalb_Chr08g0245691 Lupinus albus HOM05D004952 ORTHO05D006131 1.7e-298 1029.6 1087 53.0
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 1.7e-298 1029.6 1096 52.9
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 3.2e-297 1025.4 1091 52.2
ClCG05G019550 Citrullus lanatus HOM05D004952 ORTHO05D006131 4.1e-297 1025.0 1114 51.9
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 5.4e-297 1024.6 1109 52.9
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 7.8e-296 1020.8 1065 53.3
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 1.0e-295 1020.4 1092 51.6
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 9.6e-294 1013.8 1082 53.0
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 1.2e-293 1013.4 1075 53.2
Ca_15974_v3 Cicer arietinum L. HOM05D004952 ORTHO05D006131 4.7e-293 1011.5 1118 52.0
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 2.2e-290 1002.7 1086 51.8
MSTRG.25114 Avicennia marina HOM05D004952 ORTHO05D006131 4.9e-290 1001.5 1084 51.8
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 4.9e-290 1001.5 1087 51.6
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 1.7e-287 993.0 1097 50.5
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 3.9e-287 991.9 1100 50.9
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 7.3e-286 987.6 1077 51.6
DCAR_008784 Daucus carota HOM05D004952 ORTHO05D006131 1.6e-285 986.5 1091 51.2
Migut.C00614 Erythranthe guttata HOM05D004952 ORTHO05D006131 2.8e-285 985.7 1078 51.4
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 6.2e-285 984.6 1079 52.2
Manes.10G059950 Manihot esculenta HOM05D004952 ORTHO05D006131 1.4e-284 983.4 1086 52.0
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 9.0e-284 980.7 1093 50.8
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 3.4e-283 978.8 1094 50.2
THA.LOC104813523 Tarenaya hassleriana HOM05D004952 ORTHO05D006131 4.5e-283 978.4 1081 51.2
Actinidia03540 Actinidia chinensis HOM05D004952 ORTHO05D006131 7.6e-283 977.6 1030 52.9
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 9.9e-283 977.2 1093 50.5
Sabra16G0008200 Salix brachista HOM05D004952 ORTHO05D006131 1.1e-278 963.8 1173 48.5
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 3.6e-277 958.7 1381 43.6
Oeu055752.1 Olea europaea HOM05D004952 ORTHO05D006131 9.9e-275 950.7 1076 51.4
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 2.2e-274 949.5 1136 48.9
Thhalv10018067m.g Eutrema salsugineum HOM05D004952 ORTHO05D006131 3.8e-274 948.7 1093 50.0
Prupe.1G389900 Prunus persica HOM05D004952 ORTHO05D006131 6.4e-274 948.0 955 54.6
Haze_25582 Corylus avellana HOM05D004952 ORTHO05D006131 1.6e-272 943.3 1153 48.4
SalBow7G3268 Salvia bowleyana HOM05D004952 ORTHO05D006131 1.0e-271 940.6 1083 50.4
TAR625G1292 Trochodendron aralioides HOM05D004952 ORTHO05D006131 6.7e-271 937.9 1090 49.3
Nitab4.5_0000068g0320 Nicotiana tabacum HOM05D004952 ORTHO05D006131 5.6e-270 934.9 1099 48.7
BcaC03g15988 Brassica carinata HOM05D004952 ORTHO05D006131 6.2e-269 931.4 1053 50.5
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 4.0e-268 928.7 1051 51.2
Sp5g35550 Schrenkiella parvula HOM05D004952 ORTHO05D006131 1.5e-267 926.8 1091 49.6
Carub.0001s2004 Capsella rubella HOM05D004952 ORTHO05D006131 9.3e-265 917.5 1058 49.9
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 1.2e-264 917.1 1057 50.4
Peaxi162Scf01092g00128 Petunia axillaris HOM05D004952 ORTHO05D006131 2.1e-264 916.4 1086 48.2
BcaB02g07284 Brassica carinata HOM05D004952 ORTHO05D006131 1.8e-263 913.3 1061 50.6
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 2.1e-261 906.4 1067 49.8
Nitab4.5_0012613g0030 Nicotiana tabacum HOM05D004952 ORTHO05D006131 4.8e-261 905.2 1094 47.9
TPR.G26027 Trifolium pratense HOM05D004952 ORTHO05D006131 7.9e-256 887.9 940 53.2
AT1G20570 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 1.4e-252 877.1 1063 49.5
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 1.0e-250 870.9 1057 48.2
Thecc.10G126500 Theobroma cacao HOM05D004952 ORTHO05D006131 1.1e-249 867.5 881 54.4
Manes.02G076400 Manihot esculenta HOM05D004952 ORTHO05D006131 2.1e-248 863.2 912 53.3
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 4.6e-248 862.1 1053 48.1
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 1.1e-246 857.4 1129 44.5
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 2.0e-246 856.7 1133 44.3
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 7.4e-246 854.7 1118 45.7
Aa31LG4G540 Aethionema arabicum HOM05D004952 ORTHO05D006131 2.2e-245 853.2 1074 47.0
Haze_17576 Corylus avellana HOM05D004952 ORTHO05D006131 2.2e-242 843.2 882 54.0
ECA240G1628 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.6e-240 837.0 1000 48.9
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 9.1e-236 821.2 1108 44.0
SHI13748 Sapria himalayana HOM05D004952 ORTHO05D006131 2.9e-234 816.2 1083 45.0
PSO339G5893 Papaver somniferum HOM05D004952 ORTHO05D006131 2.6e-230 803.1 921 50.7
Dinv39342 Davidia involucrata HOM05D004952 ORTHO05D006131 8.2e-229 798.1 850 54.0
FAN20G1371 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.8e-228 797.0 987 47.9
Hma1.2p1_0260F.1_g104660 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 9.8e-222 774.6 789 55.3
Cc00_g16150 Coffea canephora HOM05D004952 ORTHO05D006131 1.6e-216 757.3 831 52.6
AT1G80260 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 8.8e-215 751.5 850 50.7
CARHR074230 Cardamine hirsuta HOM05D004952 ORTHO05D006131 5.9e-211 738.8 850 50.4
SGA_v2.0_scaffold156G37306 Striga asiatica HOM05D004952 ORTHO05D006131 1.0e-202 711.4 1086 40.7
Oeu007037.1 Olea europaea HOM05D004952 ORTHO05D006131 4.6e-195 686.0 1020 42.6
Cc10_g03830 Coffea canephora HOM05D004952 ORTHO05D006131 9.5e-193 678.3 699 53.9
HPP92_010073 Vanilla planifolia HOM05D004952 ORTHO05D006131 3.3e-161 573.5 978 39.2
Mapoly0015s0183 Marchantia polymorpha HOM05D004952 ORTHO05D006131 3.8e-157 560.1 1206 33.0
Pp3c13_8820 Physcomitrium patens HOM05D004952 ORTHO05D006131 9.6e-153 545.4 1198 32.6
AagrBONN_evm.TU.Sc2ySwM_344.3827 Anthoceros agrestis HOM05D004952 ORTHO05D006131 3.0e-146 523.9 1052 34.9
BcaC08g45301 Brassica carinata HOM05D004952 ORTHO05D006131 1.4e-135 488.4 822 40.4
Potri.016G000100 Populus trichocarpa HOM05D004952 ORTHO05D006131 3.1e-135 487.3 620 45.6
BolC6t38070H Brassica oleracea HOM05D004952 ORTHO05D006131 4.7e-131 473.4 661 45.4
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 4.7e-131 473.4 529 50.7
SEGI_10220 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 2.0e-126 458.0 601 45.4
CDE04G1747 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 9.4e-124 449.1 612 44.4
CSS0048180 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 2.3e-122 444.5 598 45.3
Cc00_g35230 Coffea canephora HOM05D004952 ORTHO05D006131 1.7e-109 401.7 344 62.2
CSS0028060 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 2.1e-107 394.8 380 58.4
Cc00_g35300 Coffea canephora HOM05D004952 ORTHO05D006131 4.7e-107 393.7 326 64.4
CBR_g22067 Chara braunii HOM05D004952 ORTHO05D006131 2.2e-104 384.8 1447 26.7
SEGI_19344 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 6.8e-98 363.2 787 35.1
Potri.014G184801 Populus trichocarpa HOM05D004952 ORTHO05D006131 1.7e-88 332.0 270 64.1
Potri.014G184701 Populus trichocarpa HOM05D004952 ORTHO05D006131 4.9e-80 303.9 276 59.8
SEGI_09331 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 4.6e-62 244.2 275 46.5
Actinidia22602 Actinidia chinensis HOM05D004952 ORTHO05D006131 3.3e-60 238.0 144 82.6
SEGI_10713 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 5.1e-53 214.2 282 43.6
Ah.16g107230 Amaranthus hybridus HOM05D004952 ORTHO05D006131 1.9e-52 212.2 124 81.5
Prupe.1G390100 Prunus persica HOM05D004952 ORTHO05D006131 4.9e-48 197.6 193 58.0
unitig_0.g725 Utricularia gibba HOM05D004952 ORTHO05D006131 4.2e-47 194.5 192 49.0
Glyma.04G036340 Glycine max HOM05D004952 ORTHO05D006131 2.0e-41 175.6 169 56.2
C06p29070 Brassica napus HOM05D002649 ORTHO05D002838 7.6e-41 173.7 144 59.7
Glyma.04G036460 Glycine max HOM05D004952 ORTHO05D006131 3.4e-33 148.3 85 83.5
Glyma.04G036420 Glycine max HOM05D004952 ORTHO05D006131 3.2e-23 115.2 89 61.8
C06p29060 Brassica napus HOM05D004952 ORTHO05D006131 4.3e-20 104.8 100 52.0
BolC6t38069H Brassica oleracea HOM05D004952 ORTHO05D006131 4.3e-20 104.8 100 52.0
CBR_g19823 Chara braunii HOM05D004952 ORTHO05D000937 4.1e-18 98.2 212 32.1
Glyma.04G036380 Glycine max HOM05D004952 ORTHO05D006131 1.2e-17 96.7 71 59.2
MCO11G910 Micromonas commoda HOM05D004952 ORTHO05D006131 1.3e-16 93.2 455 23.7
BcaB05g23764 Brassica carinata HOM05D004952 ORTHO05D006131 5.0e-16 91.3 60 78.3
Haze_25585 Corylus avellana HOM05D004952 ORTHO05D006131 1.4e-13 83.2 61 65.6
SGA_v2.0_scaffold5008G54579 Striga asiatica HOM05D004952 ORTHO05D006131 3.9e-13 81.6 111 44.1
MBI16_g19924_MAGBIO Magnolia biondii HOM05D004952 ORTHO05D006131 2.0e-12 79.3 57 68.4
CDE06G0077 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 4.4e-12 78.2 60 65.0
Lalb_Chr23g0266901 Lupinus albus HOM05D004952 ORTHO05D006131 4.4e-12 78.2 45 77.8
MELO3C010311.2 Cucumis melo HOM05D004952 ORTHO05D006131 2.2e-11 75.9 55 65.5
MELO3C016650.2 Cucumis melo HOM05D004952 ORTHO05D006131 2.0e-09 69.3 53 66.0
MBI13_g43601_MAGBIO Magnolia biondii HOM05D004952 ORTHO05D018024 1.4e-07 63.2 56 48.2
CDE04G0120 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 2.5e-07 62.4 63 46.0
Cre10.g430900 Chlamydomonas reinhardtii HOM05D004952 ORTHO05D006131 2.5e-07 62.4 138 29.7
Pp3c26_7850 Physcomitrium patens HOM05D004952 ORTHO05D006131 3.2e-07 62.0 96 37.5
CDE02G0214 Ceratophyllum demersum HOM05D005083 ORTHO05D006310 7.2e-07 60.8 126 31.0
unitig_0.g726 Utricularia gibba HOM05D004952 ORTHO05D006131 1.6e-06 59.7 79 41.8
Pp3c8_20000 Physcomitrium patens HOM05D005083 ORTHO05D006310 2.1e-06 59.3 223 24.7
CDE08G0008 Ceratophyllum demersum HOM05D005083 ORTHO05D006310 6.1e-06 57.8 107 31.8


User provided reference genes

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