Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 8.5e-64 246.9 129 100.0
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 1.2e-46 189.9 110 90.0
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 4.1e-42 174.9 110 80.9
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 4.1e-42 174.9 110 80.0
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 1.6e-41 172.9 106 81.1
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 4.5e-41 171.4 106 81.1
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 1.7e-40 169.5 110 76.4
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 1.7e-40 169.5 107 79.4
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 5.0e-40 167.9 107 77.6
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 6.5e-40 167.5 107 77.6
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 8.5e-40 167.2 107 78.5
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 8.5e-40 167.2 107 77.6
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 1.5e-39 166.4 107 78.5
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 1.9e-39 166.0 107 77.6
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 1.9e-39 166.0 107 77.6
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 4.2e-39 164.9 108 75.0
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 5.5e-39 164.5 107 77.6
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 5.5e-39 164.5 107 75.7
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 5.5e-39 164.5 107 77.6
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 5.5e-39 164.5 107 78.5
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 7.2e-39 164.1 107 76.6
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 7.2e-39 164.1 107 77.6
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 9.4e-39 163.7 107 75.7
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 1.2e-38 163.3 107 74.8
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 1.2e-38 163.3 121 72.7
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.2e-38 163.3 107 74.8
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 1.6e-38 162.9 105 77.1
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.6e-38 162.9 107 75.7
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 2.1e-38 162.5 106 76.4
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 2.1e-38 162.5 107 74.8
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.1e-38 162.5 107 74.8
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.1e-38 162.5 107 74.8
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.1e-38 162.5 107 75.7
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 2.7e-38 162.2 106 75.5
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 2.7e-38 162.2 107 74.8
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 6.1e-38 161.0 106 76.4
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 8.0e-38 160.6 107 75.7
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 1.0e-37 160.2 106 76.4
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 1.4e-37 159.8 106 76.4
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.4e-37 159.8 106 74.5
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 1.4e-37 159.8 106 75.5
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 1.4e-37 159.8 122 68.9
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.4e-37 159.8 107 75.7
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.4e-37 159.8 107 75.7
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 1.4e-37 159.8 107 73.8
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 1.8e-37 159.5 106 75.5
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 3.0e-37 158.7 91 91.2
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 4.0e-37 158.3 107 72.9
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 4.0e-37 158.3 107 72.9
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 5.2e-37 157.9 107 74.8
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 6.8e-37 157.5 106 75.5
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 6.8e-37 157.5 106 73.6
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 6.8e-37 157.5 107 72.0
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 6.8e-37 157.5 107 72.0
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 8.8e-37 157.1 106 72.6
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 8.8e-37 157.1 106 73.6
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 1.2e-36 156.8 107 73.8
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 2.0e-36 156.0 106 73.6
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 2.0e-36 156.0 107 73.8
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 2.6e-36 155.6 107 73.8
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 2.6e-36 155.6 106 76.4
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 4.4e-36 154.8 107 74.8
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 4.4e-36 154.8 106 71.7
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 5.7e-36 154.5 105 75.2
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 5.7e-36 154.5 107 73.8
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 7.5e-36 154.1 107 72.0
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 7.5e-36 154.1 106 72.6
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 7.5e-36 154.1 107 72.9
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 7.5e-36 154.1 111 70.3
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 9.8e-36 153.7 106 72.6
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 1.3e-35 153.3 103 75.7
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 1.7e-35 152.9 106 72.6
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 2.2e-35 152.5 107 69.2
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 2.2e-35 152.5 106 72.6
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 3.7e-35 151.8 106 71.7
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 3.7e-35 151.8 107 67.3
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 4.8e-35 151.4 107 72.9
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 4.8e-35 151.4 107 72.9
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 4.8e-35 151.4 106 72.6
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 4.8e-35 151.4 107 72.0
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 4.8e-35 151.4 104 74.0
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 6.3e-35 151.0 107 71.0
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 6.3e-35 151.0 107 72.0
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 6.3e-35 151.0 103 72.8
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 6.3e-35 151.0 121 65.3
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 6.3e-35 151.0 106 70.8
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 8.3e-35 150.6 107 71.0
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 8.3e-35 150.6 106 71.7
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 1.4e-34 149.8 107 70.1
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 1.4e-34 149.8 107 70.1
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 1.4e-34 149.8 107 70.1
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 1.4e-34 149.8 106 70.8
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 2.4e-34 149.1 122 62.3
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.4e-34 149.1 126 64.3
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 3.1e-34 148.7 107 69.2
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 3.1e-34 148.7 107 70.1
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 3.1e-34 148.7 106 72.6
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 3.1e-34 148.7 107 69.2
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 5.4e-34 147.9 105 70.5
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 5.4e-34 147.9 107 66.4
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 1.6e-33 146.4 105 72.4
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 1.6e-33 146.4 105 67.6
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 2.0e-33 146.0 107 69.2
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 2.0e-33 146.0 106 67.9
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 2.7e-33 145.6 106 70.8
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 3.5e-33 145.2 107 68.2
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 5.9e-33 144.4 106 69.8
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 5.9e-33 144.4 102 70.6
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 1.0e-32 143.7 96 75.0
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 1.0e-32 143.7 105 68.6
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 1.2e-30 136.7 106 68.9
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 1.0e-29 133.7 101 66.3
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 3.0e-29 132.1 106 63.2
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 4.0e-29 131.7 103 66.0
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 9.8e-28 127.1 116 62.9
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 3.7e-27 125.2 104 58.7
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 6.3e-27 124.4 106 59.4
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 1.1e-26 123.6 106 57.5
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.4e-26 123.2 106 61.3
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 1.2e-25 120.2 107 61.7
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 1.3e-24 116.7 107 59.8
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 3.8e-24 115.2 81 72.8
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 3.7e-19 98.6 71 70.4
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 3.7e-19 98.6 71 70.4
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 3.7e-19 98.6 71 70.4
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 8.3e-19 97.4 180 36.1
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 1.1e-18 97.1 100 55.0
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 1.4e-18 96.7 84 57.1
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 7.0e-18 94.4 102 52.0
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.5e-17 92.0 102 50.0
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 3.6e-14 82.0 124 41.9
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 1.1e-13 80.5 44 93.2
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 1.8e-13 79.7 106 42.5
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 9.8e-12 73.9 45 80.0
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 6.4e-11 71.2 49 71.4
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 4.6e-09 65.1 39 84.6
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 6.6e-08 61.2 42 71.4
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 6.6e-08 61.2 41 68.3
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 3.3e-07 58.9 44 68.2
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.6e-06 56.6 37 78.4
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 1.6e-06 56.6 37 78.4
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 1.6e-06 56.6 37 78.4
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 2.8e-06 55.8 38 73.7
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 8.1e-06 54.3 48 64.6


User provided reference genes

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