Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 1.8e-218 762.3 389 100.0
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.2e-134 483.8 454 59.5
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 9.5e-127 457.6 264 84.1
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 4.1e-122 442.2 367 66.2
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 6.6e-120 434.9 359 66.3
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 6.6e-120 434.9 363 65.0
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 6.6e-120 434.9 374 62.8
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 8.6e-120 434.5 376 63.0
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 2.5e-119 433.0 328 69.2
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 4.3e-119 432.2 379 63.6
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 5.2e-117 425.2 375 61.6
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 8.9e-117 424.5 303 71.6
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 1.5e-116 423.7 376 63.8
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 2.0e-116 423.3 303 72.3
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 7.6e-116 421.4 284 72.9
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 9.9e-116 421.0 281 74.0
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 1.3e-115 420.6 355 64.8
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 2.2e-115 419.9 364 64.8
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 4.9e-115 418.7 356 64.3
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 6.4e-115 418.3 297 71.0
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 8.4e-115 417.9 357 63.3
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 8.4e-115 417.9 344 66.3
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 1.1e-114 417.5 303 70.6
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 1.1e-114 417.5 329 67.5
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 5.4e-114 415.2 298 69.5
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 7.1e-114 414.8 344 66.0
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 9.3e-114 414.5 306 70.6
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 9.3e-114 414.5 368 60.9
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 1.2e-113 414.1 359 63.0
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 1.6e-113 413.7 314 67.2
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 2.1e-113 413.3 294 69.0
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 3.5e-113 412.5 305 69.8
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 6.0e-113 411.8 367 63.5
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 1.0e-112 411.0 271 74.2
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 3.0e-112 409.5 283 73.9
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 3.0e-112 409.5 349 62.8
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 6.6e-112 408.3 261 75.5
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 8.7e-112 407.9 304 68.4
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 3.3e-111 406.0 349 62.5
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 7.3e-111 404.8 335 64.2
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 7.3e-111 404.8 304 68.4
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 3.6e-110 402.5 282 70.2
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 4.8e-110 402.1 308 65.9
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 8.1e-110 401.4 392 57.7
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 1.8e-109 400.2 356 61.0
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 1.8e-109 400.2 277 69.0
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 3.1e-109 399.4 352 61.4
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 1.5e-108 397.1 280 73.2
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 5.8e-108 395.2 354 60.5
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 1.3e-107 394.0 281 69.0
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 2.2e-107 393.3 280 72.9
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 2.9e-107 392.9 283 68.6
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 3.8e-107 392.5 283 70.0
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 1.1e-106 391.0 352 60.5
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 1.4e-106 390.6 343 61.8
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 2.4e-106 389.8 291 64.9
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 3.2e-106 389.4 294 66.0
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 5.4e-106 388.7 358 58.7
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 7.1e-106 388.3 307 65.5
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 2.1e-105 386.7 348 60.1
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 6.0e-105 385.2 323 61.3
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 1.0e-104 384.4 354 60.5
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 1.7e-104 383.6 361 58.4
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 3.0e-104 382.9 315 62.2
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 3.9e-104 382.5 252 73.4
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 5.1e-104 382.1 319 62.1
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 8.7e-104 381.3 314 62.4
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 1.1e-103 380.9 348 59.5
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.5e-103 380.6 292 65.4
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 2.5e-103 379.8 347 59.7
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 2.5e-103 379.8 333 61.6
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 3.3e-103 379.4 348 59.5
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 5.6e-103 378.6 355 59.2
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 1.3e-102 377.5 281 68.0
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 1.6e-102 377.1 321 60.7
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 2.8e-102 376.3 352 59.7
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 8.1e-102 374.8 296 63.2
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 1.4e-101 374.0 345 58.3
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 1.8e-101 373.6 292 69.5
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 5.8e-100 368.6 361 58.2
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 7.6e-100 368.2 292 64.0
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 3.8e-99 365.9 272 66.2
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 5.4e-98 362.1 304 60.9
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 9.3e-98 361.3 303 63.0
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 1.2e-97 360.9 331 57.4
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.1e-93 347.8 282 63.5
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.0e-92 343.6 351 57.0
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 4.9e-91 339.0 348 58.3
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 9.6e-87 324.7 278 58.6
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.3e-80 304.3 247 62.8
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 3.8e-75 286.2 230 60.4
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 6.7e-72 275.4 227 56.8
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 7.4e-71 271.9 245 53.9
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 1.5e-68 264.2 196 64.8
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.3e-67 261.2 224 53.1
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 6.5e-67 258.8 361 45.4
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 1.4e-64 251.1 191 66.5
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 5.1e-64 249.2 303 50.2
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 6.7e-64 248.8 206 62.6
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 1.1e-63 248.1 206 62.6
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 4.4e-63 246.1 227 52.4
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 3.7e-62 243.0 332 46.1
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.0e-59 235.0 238 46.6
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 5.2e-56 222.6 116 87.9
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.3e-54 218.0 186 60.2
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 8.3e-46 188.7 233 38.2
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 5.4e-45 186.0 161 59.0
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 7.0e-45 185.7 205 43.9
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.0e-43 181.8 154 53.9
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.9e-42 177.6 120 70.0
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 1.2e-39 168.3 220 41.4
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 7.2e-34 149.1 180 52.8
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 7.2e-34 149.1 193 49.7
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 5.0e-27 126.3 149 52.3
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 7.3e-26 122.5 159 49.1
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.5e-23 114.8 101 59.4
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 1.3e-22 111.7 129 57.4
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 3.7e-22 110.2 75 77.3
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 1.6e-17 94.7 206 30.6
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 2.9e-14 84.0 104 44.2
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 4.1e-13 80.1 67 65.7
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 1.1e-08 65.5 148 27.7
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 2.3e-08 64.3 143 28.7
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 3.1e-08 63.9 153 32.7
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 4.0e-08 63.5 148 31.1
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 5.2e-08 63.2 146 31.5
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 6.8e-08 62.8 142 30.3
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 6.8e-08 62.8 142 30.3
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 8.9e-08 62.4 153 31.4
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 8.9e-08 62.4 150 32.0
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 1.2e-07 62.0 151 30.5
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 1.2e-07 62.0 142 29.6
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 1.2e-07 62.0 142 29.6
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 2.0e-07 61.2 142 29.6
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 2.0e-07 61.2 148 31.8
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 3.4e-07 60.5 151 31.8
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 3.4e-07 60.5 148 31.1
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 4.4e-07 60.1 142 28.9
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 4.4e-07 60.1 141 28.4
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 5.8e-07 59.7 153 30.7
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 5.8e-07 59.7 148 31.1
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 7.6e-07 59.3 198 23.2
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 7.6e-07 59.3 198 23.2
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 7.6e-07 59.3 141 30.5
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 7.6e-07 59.3 195 28.2
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 9.9e-07 58.9 203 22.7
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 1.3e-06 58.5 191 23.6
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 1.3e-06 58.5 218 25.2
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 1.7e-06 58.2 153 34.0
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 1.7e-06 58.2 147 32.7
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 1.7e-06 58.2 158 31.0
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 1.7e-06 58.2 152 32.2
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 1.7e-06 58.2 141 30.5
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 2.9e-06 57.4 203 22.2
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 2.9e-06 57.4 203 22.2
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 2.9e-06 57.4 203 22.2
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 3.7e-06 57.0 148 29.1
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 4.9e-06 56.6 154 31.8
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 4.9e-06 56.6 152 32.9
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 6.4e-06 56.2 203 22.7
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 6.4e-06 56.2 153 31.4
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 6.4e-06 56.2 143 30.8
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 6.4e-06 56.2 142 25.4
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 6.4e-06 56.2 148 29.7
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 8.4e-06 55.8 203 21.2
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 8.4e-06 55.8 191 23.0
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 8.4e-06 55.8 173 27.2


User provided reference genes

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