Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02838 Beta vulgaris HOM05D000611 ORTHO05D000809 1.9e-67 259.2 145 100.0
EL10Ac2g02837 Beta vulgaris HOM05D000611 ORTHO05D000809 6.9e-22 107.8 56 89.3
EL10Ac2g02839 Beta vulgaris HOM05D000611 ORTHO05D000809 4.9e-20 101.7 49 91.8
EL10Ac2g02840 Beta vulgaris HOM05D000611 ORTHO05D000809 5.1e-17 91.7 65 64.6
Hund10768 Selenicereus undatus HOM05D000611 ORTHO05D000809 3.7e-15 85.5 56 69.6
AUR62039714 Chenopodium quinoa HOM05D000611 ORTHO05D000809 6.3e-15 84.7 56 71.4
AUR62036263 Chenopodium quinoa HOM05D000611 ORTHO05D000809 1.8e-14 83.2 56 69.6
EL10Ac5g11756 Beta vulgaris HOM05D000611 ORTHO05D000809 3.8e-12 75.5 56 62.5
EL10Ac8g20013 Beta vulgaris HOM05D000611 ORTHO05D000809 3.8e-12 75.5 49 73.5
Thecc.05G244900 Theobroma cacao HOM05D000611 ORTHO05D000809 3.2e-11 72.4 56 57.1
Duzib128G1685 Durio zibethinus HOM05D000611 ORTHO05D000809 4.2e-11 72.0 56 60.7
arahy.Tifrunner.gnm1.ann1.70YL0N Arachis hypogaea HOM05D000611 ORTHO05D000809 5.5e-11 71.6 56 55.4
TAR633G1322 Trochodendron aralioides HOM05D000611 ORTHO05D000809 7.2e-11 71.2 56 58.9
Prupe.6G151600 Prunus persica HOM05D000611 ORTHO05D000809 9.4e-11 70.9 56 58.9
SalBow3G0482 Salvia bowleyana HOM05D000611 ORTHO05D000809 1.2e-10 70.5 56 55.4
Thecc.09G265700 Theobroma cacao HOM05D000611 ORTHO05D000809 1.2e-10 70.5 69 46.4
DCAR_012287 Daucus carota HOM05D000611 ORTHO05D000809 1.6e-10 70.1 56 58.9
arahy.Tifrunner.gnm1.ann1.DX8RYA Arachis hypogaea HOM05D000611 ORTHO05D000809 2.1e-10 69.7 56 53.6
Oeu029558.1 Olea europaea HOM05D000611 ORTHO05D000809 2.1e-10 69.7 56 55.4
Prupe.3G134100 Prunus persica HOM05D000611 ORTHO05D000809 2.1e-10 69.7 56 60.7
COL.COLO4_28606 Corchorus olitorius HOM05D000611 ORTHO05D000809 2.7e-10 69.3 56 57.1
Migut.N02423 Erythranthe guttata HOM05D000611 ORTHO05D000809 2.7e-10 69.3 56 51.8
Aqoxy1G00542 Aquilegia oxysepala HOM05D000611 ORTHO05D000809 3.6e-10 68.9 56 53.6
MSTRG.19353 Avicennia marina HOM05D000611 ORTHO05D000809 3.6e-10 68.9 56 55.4
Dinv32137 Davidia involucrata HOM05D000611 ORTHO05D000809 3.6e-10 68.9 56 58.9
FAN23G0451 Fragaria x ananassa HOM05D000611 ORTHO05D000809 3.6e-10 68.9 56 62.5
MD17G1235600 Malus domestica HOM05D000611 ORTHO05D000809 3.6e-10 68.9 56 58.9
Aqoxy3G00859 Aquilegia oxysepala HOM05D000611 ORTHO05D000809 4.6e-10 68.6 64 46.9
Haze_20458 Corylus avellana HOM05D000611 ORTHO05D000809 4.6e-10 68.6 56 53.6
Lj2C893G4 Lonicera japonica HOM05D000611 ORTHO05D000809 4.6e-10 68.6 56 50.0
MBI11_g45238_MAGBIO Magnolia biondii HOM05D000611 ORTHO05D000809 6.1e-10 68.2 56 57.1
CSS0001405 Camellia sinensis var. sinensis HOM05D000611 ORTHO05D000809 7.9e-10 67.8 56 57.1
Duzib168G2209 Durio zibethinus HOM05D000611 ORTHO05D000809 7.9e-10 67.8 56 51.8
FAN05G0188 Fragaria x ananassa HOM05D000611 ORTHO05D000809 7.9e-10 67.8 56 60.7
FAN09G1078 Fragaria x ananassa HOM05D000611 ORTHO05D000809 7.9e-10 67.8 56 60.7
FAN14G4558 Fragaria x ananassa HOM05D000611 ORTHO05D000809 7.9e-10 67.8 56 60.7
Nn6g32381 Nelumbo nucifera HOM05D000611 ORTHO05D000809 7.9e-10 67.8 57 57.9
Peaxi162Scf00061g03010 Petunia axillaris HOM05D000611 ORTHO05D000809 7.9e-10 67.8 56 57.1
CAN.G245.3 Capsicum annuum HOM05D000611 ORTHO05D000809 1.0e-09 67.4 57 59.6
CAN.G794.12 Capsicum annuum HOM05D000611 ORTHO05D000809 1.0e-09 67.4 56 55.4
Eucgr.K01507 Eucalyptus grandis HOM05D000611 ORTHO05D000809 1.0e-09 67.4 56 53.6
FvH4_1g25060 Fragaria vesca HOM05D000611 ORTHO05D000809 1.0e-09 67.4 56 60.7
FAN19G1640 Fragaria x ananassa HOM05D000611 ORTHO05D000809 1.0e-09 67.4 56 60.7
Gohir.D13G102300 Gossypium hirsutum HOM05D000611 ORTHO05D000809 1.0e-09 67.4 56 55.4
Gorai.013G114500 Gossypium raimondii HOM05D000611 ORTHO05D000809 1.0e-09 67.4 56 55.4
PSO339G6700 Papaver somniferum HOM05D000611 ORTHO05D000809 1.0e-09 67.4 56 51.8
SGA_v2.0_scaffold112G31647 Striga asiatica HOM05D000611 ORTHO05D000809 1.0e-09 67.4 56 51.8
Cfa008667 Carpinus fangiana HOM05D000611 ORTHO05D000809 1.4e-09 67.0 56 57.1
Ciclev10018273m.g Citrus clementina HOM05D000611 ORTHO05D000809 1.4e-09 67.0 56 50.0
Gohir.A13G097600 Gossypium hirsutum HOM05D000611 ORTHO05D000809 1.4e-09 67.0 56 55.4
Nitab4.5_0007747g0020 Nicotiana tabacum HOM05D000611 ORTHO05D000809 1.4e-09 67.0 56 53.6
Solyc01g056600.2 Solanum lycopersicum HOM05D000611 ORTHO05D000809 1.8e-09 66.6 57 56.1
Prupe.3G133800 Prunus persica HOM05D000611 ORTHO05D000809 2.3e-09 66.2 56 57.1
SGA_v2.0_scaffold16G07557 Striga asiatica HOM05D000611 ORTHO05D000809 2.3e-09 66.2 56 53.6
Actinidia03940 Actinidia chinensis HOM05D000611 ORTHO05D000809 3.0e-09 65.9 56 55.4
CiPaw.09G165000 Carya illinoinensis HOM05D000611 ORTHO05D000809 3.0e-09 65.9 56 51.8
FAN21G3967 Fragaria x ananassa HOM05D000611 ORTHO05D000809 3.0e-09 65.9 56 58.9
Cc00_g06240 Coffea canephora HOM05D000611 ORTHO05D000809 3.9e-09 65.5 56 53.6
FvH4_3g27052 Fragaria vesca HOM05D000611 ORTHO05D000809 3.9e-09 65.5 56 51.8
FAN11G3944 Fragaria x ananassa HOM05D000611 ORTHO05D000809 3.9e-09 65.5 56 51.8
Gohir.D07G118900 Gossypium hirsutum HOM05D000611 ORTHO05D000809 3.9e-09 65.5 56 51.8
Gorai.001G127900 Gossypium raimondii HOM05D000611 ORTHO05D000809 3.9e-09 65.5 56 51.8
Nitab4.5_0001606g0050 Nicotiana tabacum HOM05D000611 ORTHO05D000809 3.9e-09 65.5 58 58.6
Atru.chr3.3017 Acer truncatum HOM05D000611 ORTHO05D000809 5.1e-09 65.1 56 50.0
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 5.1e-09 65.1 56 53.6
Oeu032079.1 Olea europaea HOM05D000700 ORTHO05D000397 5.1e-09 65.1 56 53.6
Actinidia37799 Actinidia chinensis HOM05D000611 ORTHO05D000809 6.7e-09 64.7 46 60.9
TWI34G2036 Tripterygium wilfordii HOM05D000611 ORTHO05D000809 6.7e-09 64.7 56 51.8
RcHm_v2.0_Chr5g0049631 Rosa chinensis HOM05D000611 ORTHO05D000809 8.8e-09 64.3 56 51.8
Sopen01g020540 Solanum pennellii HOM05D000611 ORTHO05D000809 8.8e-09 64.3 57 54.4
SGA_v2.0_scaffold31G12798 Striga asiatica HOM05D000611 ORTHO05D000809 8.8e-09 64.3 57 49.1
AUR62020186 Chenopodium quinoa HOM05D000611 ORTHO05D000809 1.1e-08 63.9 56 51.8
FAN25G3834 Fragaria x ananassa HOM05D000611 ORTHO05D000809 1.1e-08 63.9 54 51.9
Hma1.2p1_0768F.1_g215620 Hydrangea macrophylla HOM05D000611 ORTHO05D000809 1.1e-08 63.9 56 55.4
Lsat_1_v5_gn_3_114541 Lactuca sativa HOM05D000611 ORTHO05D000809 1.1e-08 63.9 56 50.0
MD11G1178800 Malus domestica HOM05D000611 ORTHO05D000809 1.1e-08 63.9 56 51.8
PGSC0003DMG400008709 Solanum tuberosum HOM05D000611 ORTHO05D000809 1.1e-08 63.9 56 57.1
VMungo0464G0567 Vigna mungo HOM05D000611 ORTHO05D000809 1.1e-08 63.9 56 51.8
Nitab4.5_0000098g0090 Nicotiana tabacum HOM05D000611 ORTHO05D000809 1.5e-08 63.5 57 57.9
Potri.009G152900 Populus trichocarpa HOM05D000611 ORTHO05D000809 1.5e-08 63.5 56 50.0
RcHm_v2.0_Chr2g0127561 Rosa chinensis HOM05D000611 ORTHO05D000809 1.5e-08 63.5 46 63.0
FAN11G0993 Fragaria x ananassa HOM05D000611 ORTHO05D000809 2.0e-08 63.2 56 55.4
Lj6g0018938 Lotus japonicus HOM05D000611 ORTHO05D000809 2.0e-08 63.2 56 48.2
Potri.019G037900 Populus trichocarpa HOM05D000611 ORTHO05D000809 2.0e-08 63.2 56 51.8
ATR0697G034 Amborella trichopoda HOM05D000611 ORTHO05D000809 2.5e-08 62.8 56 44.6
Ciclev10020214m.g Citrus clementina HOM05D000611 ORTHO05D000809 2.5e-08 62.8 56 53.6
Solyc01g009190.3 Solanum lycopersicum HOM05D000611 ORTHO05D000809 3.3e-08 62.4 56 53.6
TPR.G39533 Trifolium pratense HOM05D000611 ORTHO05D000809 3.3e-08 62.4 54 51.9
Migut.J00764 Erythranthe guttata HOM05D000611 ORTHO05D000809 4.3e-08 62.0 56 53.6
Phvul.004G051700 Phaseolus vulgaris HOM05D000611 ORTHO05D000809 4.3e-08 62.0 56 48.2
Manes.09G138400 Manihot esculenta HOM05D000611 ORTHO05D000809 5.7e-08 61.6 56 51.8
Potri.013G061500 Populus trichocarpa HOM05D000611 ORTHO05D000809 5.7e-08 61.6 56 51.8
Rhsim01G0197600 Rhododendron simsii HOM05D000611 ORTHO05D000809 5.7e-08 61.6 56 50.0
Sabra13G0054400 Salix brachista HOM05D000611 ORTHO05D000809 5.7e-08 61.6 56 51.8
EL10Ac8g20014 Beta vulgaris HOM05D000611 ORTHO05D000809 7.4e-08 61.2 43 69.8
Potri.019G038184 Populus trichocarpa HOM05D000611 ORTHO05D000809 7.4e-08 61.2 56 50.0
PGR142G2002 Punica granatum HOM05D000611 ORTHO05D000809 7.4e-08 61.2 56 46.4
THA.LOC104823780 Tarenaya hassleriana HOM05D000611 ORTHO05D000809 7.4e-08 61.2 56 46.4
Zm00001eb151900 Zea mays HOM05D000611 ORTHO05D000809 7.4e-08 61.2 47 53.2
COL.COLO4_25321 Corchorus olitorius HOM05D000611 ORTHO05D000809 9.7e-08 60.8 56 48.2
Atru.chr3.3020 Acer truncatum HOM05D000611 ORTHO05D000809 1.3e-07 60.5 56 46.4
DCAR_012285 Daucus carota HOM05D000611 ORTHO05D000809 1.3e-07 60.5 56 51.8
QL07p018587 Quercus lobata HOM05D000611 ORTHO05D000809 1.3e-07 60.5 62 51.6
Sabra19G0049100 Salix brachista HOM05D000611 ORTHO05D000809 1.3e-07 60.5 44 63.6
AUR62001594 Chenopodium quinoa HOM05D000611 ORTHO05D000809 1.7e-07 60.1 56 50.0
Psat5g109080 Pisum sativum HOM05D000611 ORTHO05D000809 1.7e-07 60.1 56 48.2
VMungo0540G2129 Vigna mungo HOM05D000611 ORTHO05D000809 1.7e-07 60.1 56 48.2
Cc06_g07300 Coffea canephora HOM05D000611 ORTHO05D000809 2.2e-07 59.7 55 52.7
Lsat_1_v5_gn_3_114521 Lactuca sativa HOM05D000611 ORTHO05D000809 2.2e-07 59.7 56 48.2
SHI14934 Sapria himalayana HOM05D000611 ORTHO05D000809 2.2e-07 59.7 56 48.2
Lj1C1056G10 Lonicera japonica HOM05D000611 ORTHO05D000809 2.8e-07 59.3 58 53.4
Sed0023110 Sechium edule HOM05D000611 ORTHO05D000809 2.8e-07 59.3 56 48.2
Dinv05571 Davidia involucrata HOM05D000611 ORTHO05D000809 3.7e-07 58.9 56 51.8
Lj1A1057G22 Lonicera japonica HOM05D000611 ORTHO05D000809 3.7e-07 58.9 58 53.4
Lalb_Chr14g0364631 Lupinus albus HOM05D000611 ORTHO05D000809 4.8e-07 58.5 46 50.0
Lalb_Chr21g0317261 Lupinus albus HOM05D000611 ORTHO05D000809 4.8e-07 58.5 46 56.5
PGR102G2603 Punica granatum HOM05D000611 ORTHO05D000809 4.8e-07 58.5 56 44.6
TPR.G36395 Trifolium pratense HOM05D000611 ORTHO05D000809 4.8e-07 58.5 56 46.4
vmacro12778 Vaccinium macrocarpon HOM05D000611 ORTHO05D000809 4.8e-07 58.5 56 55.4
Atru.chr2.1464 Acer truncatum HOM05D000611 ORTHO05D000809 6.3e-07 58.2 55 50.9
ECA240G2968 Erigeron canadensis HOM05D000611 ORTHO05D000809 6.3e-07 58.2 46 56.5
Medtr3g079650 Medicago truncatula HOM05D000611 ORTHO05D000809 6.3e-07 58.2 56 46.4
Phvul.006G039700 Phaseolus vulgaris HOM05D000611 ORTHO05D000809 6.3e-07 58.2 56 46.4
Potri.019G038100 Populus trichocarpa HOM05D000611 ORTHO05D000809 6.3e-07 58.2 56 48.2
Potri.019G038226 Populus trichocarpa HOM05D000611 ORTHO05D000809 6.3e-07 58.2 56 48.2
Glyma.05G090000 Glycine max HOM05D000611 ORTHO05D000809 8.2e-07 57.8 56 44.6
Glyma.08G313900 Glycine max HOM05D000611 ORTHO05D000809 8.2e-07 57.8 44 56.8
Lj2g0026825 Lotus japonicus HOM05D000611 ORTHO05D000809 8.2e-07 57.8 55 49.1
Zm00001eb332140 Zea mays HOM05D000611 ORTHO05D000809 8.2e-07 57.8 47 53.2
CANSAT25G3146 Cannabis sativa HOM05D000611 ORTHO05D000809 1.1e-06 57.4 56 46.4
unitig_21.g20309 Utricularia gibba HOM05D000611 ORTHO05D000809 1.1e-06 57.4 46 54.3
vmacro07556 Vaccinium macrocarpon HOM05D000611 ORTHO05D000809 1.1e-06 57.4 46 58.7
ClCG10G013620 Citrullus lanatus HOM05D000611 ORTHO05D000809 1.4e-06 57.0 56 48.2
MELO3C026605.2 Cucumis melo HOM05D000611 ORTHO05D000809 1.4e-06 57.0 56 48.2
Hma1.2p1_1288F.1_g273320 Hydrangea macrophylla HOM05D000611 ORTHO05D000809 1.4e-06 57.0 56 48.2
Lalb_Chr02g0157271 Lupinus albus HOM05D000611 ORTHO05D000809 1.4e-06 57.0 56 44.6
HPP92_001900 Vanilla planifolia HOM05D000611 ORTHO05D000809 1.4e-06 57.0 56 46.4
Ah.08g222560 Amaranthus hybridus HOM05D000611 ORTHO05D000809 1.8e-06 56.6 56 46.4
CsaV3_3G043040 Cucumis sativus L. HOM05D000611 ORTHO05D000809 1.8e-06 56.6 56 48.2
MD09G1006600 Malus domestica HOM05D000611 ORTHO05D000809 1.8e-06 56.6 56 46.4
Psat5g113280 Pisum sativum HOM05D000611 ORTHO05D000809 1.8e-06 56.6 56 41.1
Solyc03g118950.3 Solanum lycopersicum HOM05D000611 ORTHO05D004334 1.8e-06 56.6 66 40.9
EL10Ac7g16245 Beta vulgaris HOM05D000611 ORTHO05D000809 2.4e-06 56.2 56 44.6
TWI79G1772 Tripterygium wilfordii HOM05D000611 ORTHO05D000809 2.4e-06 56.2 46 50.0
Lj1g0014888 Lotus japonicus HOM05D000611 ORTHO05D000809 3.1e-06 55.8 56 44.6
Sc20g0001860 Simmondsia chinensis HOM05D000611 ORTHO05D000809 3.1e-06 55.8 56 44.6
BcaB04g19414 Brassica carinata HOM05D000611 ORTHO05D000809 4.1e-06 55.5 56 44.6
C09p03370 Brassica napus HOM05D000611 ORTHO05D000809 4.1e-06 55.5 56 44.6
BolC9t53258H Brassica oleracea HOM05D000611 ORTHO05D000809 4.1e-06 55.5 56 44.6
Carub.0005s0508 Capsella rubella HOM05D000611 ORTHO05D000809 4.1e-06 55.5 56 44.6
Thhalv10004385m.g Eutrema salsugineum HOM05D000611 ORTHO05D000809 4.1e-06 55.5 56 44.6
FAN21G2893 Fragaria x ananassa HOM05D000537 ORTHO05D000415 4.1e-06 55.5 54 50.0
Medtr3g079720 Medicago truncatula HOM05D000611 ORTHO05D000809 4.1e-06 55.5 57 45.6
Sp2g16050 Schrenkiella parvula HOM05D000611 ORTHO05D000809 4.1e-06 55.5 56 44.6
RcHm_v2.0_Chr5g0044861 Rosa chinensis HOM05D000537 ORTHO05D000809 5.3e-06 55.1 54 44.4
RcHm_v2.0_Chr5g0044881 Rosa chinensis HOM05D000537 ORTHO05D000415 5.3e-06 55.1 54 44.4
RcHm_v2.0_Chr5g0045031 Rosa chinensis HOM05D000611 ORTHO05D000809 5.3e-06 55.1 54 44.4
Actinidia33831 Actinidia chinensis HOM05D000611 ORTHO05D000809 6.9e-06 54.7 56 44.6
Lalb_Chr19g0133021 Lupinus albus HOM05D000611 ORTHO05D000809 6.9e-06 54.7 56 48.2
Oeu030189.1 Olea europaea HOM05D000611 ORTHO05D000809 6.9e-06 54.7 56 44.6
QL01p018552 Quercus lobata HOM05D000611 ORTHO05D000809 6.9e-06 54.7 56 46.4
GSVIVG01029969001 Vitis vinifera HOM05D000611 ORTHO05D000809 6.9e-06 54.7 56 48.2
Psat5g113120 Pisum sativum HOM05D000611 ORTHO05D000809 9.1e-06 54.3 56 41.1
Rhsim03G0053100 Rhododendron simsii HOM05D000611 ORTHO05D000809 9.1e-06 54.3 46 56.5
SGA_v2.0_scaffold147G36386 Striga asiatica HOM05D000611 ORTHO05D007148 9.1e-06 54.3 46 52.2


User provided reference genes

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