Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 2522.7 1177 100.0
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 2148.6 1175 84.3
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 2134.0 1192 82.8
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1830.8 1104 76.0
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1735.3 1095 71.6
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1725.7 1097 71.1
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1718.0 1097 70.7
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1714.1 1097 70.4
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1713.7 1110 69.3
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1709.5 1109 68.9
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1709.5 1097 70.1
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1704.5 1109 68.8
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1701.4 1113 70.4
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1696.4 1097 70.0
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1692.9 1113 69.2
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1690.2 1095 70.0
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1687.2 1109 68.4
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1682.5 1120 68.0
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1673.3 1097 69.4
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1668.3 1116 68.5
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1663.3 1112 67.9
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1662.1 1093 68.7
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1661.0 1097 67.5
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1658.7 1094 67.7
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1657.1 1094 68.6
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1653.3 1114 67.3
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1652.5 1094 68.2
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1646.3 1077 69.5
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1646.3 1090 67.3
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1644.8 1094 68.0
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1641.7 1095 68.0
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1641.3 1096 67.5
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1638.2 1093 68.1
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1637.9 1097 67.3
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1637.1 1095 66.7
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1636.7 1085 68.3
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1632.8 1097 67.5
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1632.8 1087 68.2
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1631.3 1097 66.5
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1630.5 1097 67.1
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1630.2 1086 68.1
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1630.2 1114 67.0
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1628.2 1094 67.1
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1627.8 1097 67.3
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1625.9 1085 67.6
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1624.0 1095 67.7
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1623.2 1096 67.1
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1622.8 1067 68.8
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1620.1 1096 67.2
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1620.1 1094 67.4
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1619.4 1099 66.3
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1616.7 1097 67.4
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1615.5 1116 66.5
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1614.4 1095 66.8
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1613.6 1207 62.6
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1613.2 1095 66.6
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1611.3 1096 65.1
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1610.5 1099 66.0
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1607.4 1096 66.6
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1607.0 1107 66.2
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1606.7 1099 65.4
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1605.9 1106 66.5
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1605.9 1048 69.0
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1605.5 1099 66.1
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1604.0 1108 65.6
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1603.2 1095 66.1
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1602.4 1117 65.0
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1600.9 1096 66.5
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1600.5 1117 64.9
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1597.8 1097 66.4
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1594.3 1093 66.8
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1593.9 1096 65.4
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1590.5 1077 67.4
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1584.3 1067 67.1
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1572.8 1102 64.0
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1561.2 1095 65.5
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1549.3 988 71.4
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1548.5 1105 63.6
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1544.3 1106 63.5
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1538.5 1090 65.0
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1508.0 1117 61.3
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1505.0 1140 62.0
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1497.3 1109 61.9
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1436.4 1076 60.4
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1421.4 993 66.3
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1412.9 915 70.1
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1410.2 1145 58.8
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1345.9 880 70.0
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1286.6 1172 52.2
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1273.8 1099 54.7
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1261.9 1034 57.8
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1255.4 830 69.4
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1243.4 829 68.6
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1241.1 1106 53.2
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1196.4 749 71.8
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1161.7 758 69.8
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1147.5 740 70.4
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1145.6 1119 48.9
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 3.9e-309 1065.1 652 72.7
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 6.7e-301 1037.7 1126 47.3
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 5.5e-287 991.5 689 65.5
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 3.9e-272 942.2 599 73.1
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 9.5e-271 937.6 599 73.1
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 1.1e-247 860.9 677 60.9
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 6.0e-225 785.4 498 72.1
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 5.0e-211 739.2 568 59.5
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 6.3e-166 589.3 1509 30.2
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 2.9e-150 537.3 605 46.0
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 7.1e-133 479.6 369 59.3
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 1.0e-115 422.5 267 70.0
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 7.4e-114 416.4 596 39.8
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 8.7e-107 392.9 272 68.0
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 7.9e-100 369.8 240 68.8
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 5.0e-86 323.9 195 71.3
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 5.1e-83 313.9 174 82.8
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 5.7e-82 310.5 812 28.3
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 2.0e-79 302.0 258 52.7
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 3.6e-76 291.2 208 63.9
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 2.3e-67 261.9 201 61.7
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 5.0e-62 244.2 156 67.9
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 4.0e-59 234.6 208 50.5
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 2.9e-54 218.4 164 59.8
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 4.1e-48 198.0 130 64.6
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 1.0e-38 166.8 198 44.4
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 3.3e-37 161.8 173 46.8
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 2.1e-36 159.1 108 63.9
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 1.2e-34 153.3 124 58.1
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 2.0e-34 152.5 144 50.7
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 3.4e-34 151.8 142 51.4
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.3e-33 149.8 135 52.6
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 7.8e-31 140.6 128 50.8
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 5.1e-30 137.9 105 54.3
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 7.3e-29 134.0 82 70.7
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 6.2e-28 131.0 132 48.5
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 3.8e-25 121.7 140 45.7
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 4.1e-24 118.2 96 55.2
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 9.2e-24 117.1 109 46.8
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 2.1e-23 115.9 66 71.2
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 8.6e-22 110.5 89 57.3
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 6.2e-20 104.4 117 46.2
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.8e-19 102.8 53 81.1
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 2.6e-18 99.0 86 54.7
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 2.2e-17 95.9 85 51.8
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 3.8e-17 95.1 61 68.9
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 4.9e-17 94.7 45 82.2
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 3.2e-16 92.0 45 82.2
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 9.3e-16 90.5 88 48.9
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 2.7e-15 89.0 45 77.8
Cfa026367 Carpinus fangiana HOM05D005112 ORTHO05D123685 1.3e-14 86.7 403 24.8
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 2.5e-13 82.4 136 36.8
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 4.8e-12 78.2 114 36.8
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 1.6e-07 63.2 45 60.0
Lsat_1_v5_gn_5_181001 Lactuca sativa HOM05D005112 ORTHO05D006681 1.8e-06 59.7 90 36.7
C08p29650 Brassica napus HOM05D000711 ORTHO05D000545 2.3e-06 59.3 39 64.1
BolC8t50571H Brassica oleracea HOM05D000711 ORTHO05D000545 2.3e-06 59.3 39 64.1
BolC8t50574H Brassica oleracea HOM05D000711 ORTHO05D000545 2.3e-06 59.3 39 64.1


User provided reference genes

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