Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 2.2e-70 268.9 135 100.0
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 4.9e-62 241.1 134 85.8
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 7.0e-61 237.3 131 87.8
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 9.2e-61 236.9 134 84.3
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 1.2e-60 236.5 134 85.8
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 1.6e-60 236.1 134 85.8
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.6e-60 236.1 134 83.6
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.6e-60 236.1 134 83.6
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.6e-60 236.1 134 83.6
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 2.0e-60 235.7 133 88.7
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 3.5e-60 235.0 134 85.8
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 3.5e-60 235.0 134 85.8
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 1.0e-59 233.4 132 84.8
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 1.0e-59 233.4 134 85.1
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 1.0e-59 233.4 131 86.3
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.3e-59 233.0 134 83.6
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.3e-59 233.0 134 83.6
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.3e-59 233.0 134 83.6
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 1.3e-59 233.0 135 86.7
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 1.7e-59 232.6 134 83.6
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 2.3e-59 232.3 135 84.4
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.0e-59 231.9 134 84.3
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 3.0e-59 231.9 132 84.1
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 3.0e-59 231.9 134 84.3
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.9e-59 231.5 134 84.3
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 3.9e-59 231.5 134 82.8
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 3.9e-59 231.5 134 82.8
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 5.0e-59 231.1 132 84.8
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 5.0e-59 231.1 131 86.3
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 6.6e-59 230.7 133 86.5
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 6.6e-59 230.7 134 83.6
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 6.6e-59 230.7 134 84.3
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 8.6e-59 230.3 134 85.1
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 1.5e-58 229.6 129 84.5
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.5e-58 229.6 132 86.4
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 1.9e-58 229.2 140 82.1
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 1.9e-58 229.2 134 82.8
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 1.9e-58 229.2 132 82.6
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 1.9e-58 229.2 132 82.6
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 1.9e-58 229.2 132 82.6
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 2.5e-58 228.8 129 86.8
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 2.5e-58 228.8 135 80.7
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 2.5e-58 228.8 134 84.3
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 3.3e-58 228.4 135 83.0
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 1.2e-57 226.5 131 83.2
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 2.8e-57 225.3 132 82.6
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 3.6e-57 224.9 135 82.2
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 4.7e-57 224.6 134 82.8
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 6.2e-57 224.2 131 82.4
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 1.0e-56 223.4 135 83.7
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 1.0e-56 223.4 134 79.9
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 1.8e-56 222.6 133 84.2
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 1.8e-56 222.6 136 83.1
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 2.3e-56 222.2 131 84.0
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 5.2e-56 221.1 134 79.9
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 5.2e-56 221.1 127 85.8
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 6.8e-56 220.7 132 78.0
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 8.9e-56 220.3 158 72.8
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 1.5e-55 219.5 142 78.9
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 1.5e-55 219.5 140 78.6
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 1.5e-55 219.5 135 78.5
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 2.0e-55 219.2 137 78.8
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 2.6e-55 218.8 133 81.2
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 4.4e-55 218.0 132 81.8
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 5.8e-55 217.6 132 81.1
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 5.8e-55 217.6 132 81.1
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 9.8e-55 216.9 132 81.1
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 9.8e-55 216.9 132 81.1
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 9.8e-55 216.9 132 81.1
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 1.3e-54 216.5 132 81.1
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 1.3e-54 216.5 132 81.1
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 1.3e-54 216.5 132 81.1
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 1.3e-54 216.5 134 76.9
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 1.3e-54 216.5 133 81.2
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 4.9e-54 214.5 124 83.1
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 6.4e-54 214.2 157 72.0
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 8.3e-54 213.8 132 79.5
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 8.3e-54 213.8 123 84.6
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 8.3e-54 213.8 132 78.8
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 1.1e-53 213.4 123 83.7
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 1.1e-53 213.4 132 81.8
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 1.1e-53 213.4 132 81.8
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 1.1e-53 213.4 123 84.6
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 1.4e-53 213.0 140 75.0
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 1.9e-53 212.6 132 78.8
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 1.9e-53 212.6 132 78.8
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 3.2e-53 211.8 134 74.6
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 5.4e-53 211.1 135 74.8
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 9.2e-53 210.3 132 75.0
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 1.2e-52 209.9 123 83.7
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.2e-52 209.9 132 78.8
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 2.7e-52 208.8 131 76.3
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 2.7e-52 208.8 134 73.9
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 3.5e-52 208.4 132 76.5
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 6.0e-52 207.6 135 78.5
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 1.0e-51 206.8 132 77.3
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 3.0e-51 205.3 125 80.8
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 3.9e-51 204.9 131 76.3
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 1.2e-49 199.9 134 76.9
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 3.6e-49 198.4 107 93.5
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 3.6e-49 198.4 107 93.5
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 4.7e-49 198.0 128 73.4
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 1.8e-48 196.1 139 76.3
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 6.8e-48 194.1 120 78.3
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 6.8e-48 194.1 120 78.3
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 2.9e-46 188.7 107 86.0
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 2.9e-46 188.7 124 71.8
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 4.9e-46 188.0 107 86.9
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 4.9e-46 188.0 110 88.2
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 1.4e-45 186.4 107 87.9
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 7.1e-45 184.1 119 79.0
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 7.1e-45 184.1 106 85.8
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 1.1e-42 176.8 134 71.6
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 3.6e-41 171.8 122 70.5
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 3.6e-41 171.8 104 81.7
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 6.2e-41 171.0 110 75.5
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 1.3e-38 163.3 105 77.1
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 4.9e-38 161.4 118 69.5
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 2.4e-37 159.1 115 65.2
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 3.5e-36 155.2 135 65.9
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 3.5e-36 155.2 140 59.3
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 1.7e-35 152.9 183 49.7
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 3.9e-35 151.8 98 74.5
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 6.2e-33 144.4 84 83.3
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.1e-32 143.7 85 82.4
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 6.4e-30 134.4 84 79.8
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 4.2e-29 131.7 84 78.6
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 2.1e-28 129.4 86 74.4
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 2.1e-28 129.4 136 56.6
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 3.5e-28 128.6 84 77.4
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 3.5e-28 128.6 104 58.7
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 5.1e-27 124.8 70 84.3
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 6.6e-27 124.4 120 57.5
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 1.1e-26 123.6 95 66.3
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 8.1e-25 117.5 93 65.6
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 3.1e-24 115.5 114 50.0
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 4.9e-22 108.2 64 76.6
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 1.4e-21 106.7 65 76.9
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 3.5e-20 102.1 50 92.0
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.5e-18 96.7 50 86.0
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 1.5e-18 96.7 125 40.0
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 2.5e-18 95.9 50 88.0
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 9.6e-18 94.0 49 91.8
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 6.2e-17 91.3 74 62.2
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 8.1e-17 90.9 60 81.7
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 3.1e-16 89.0 119 44.5
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 9.0e-16 87.4 49 87.8
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 2.0e-15 86.3 45 88.9
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 2.0e-15 86.3 62 69.4
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 9.6e-10 67.4 80 50.0
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 6.2e-09 64.7 125 34.4
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 1.2e-07 60.5 55 61.8
SEGI_34318 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 4.9e-06 55.1 41 65.9


User provided reference genes

Program Settings