Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 0.0e+00 2104.3 1146 100.0
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 0.0e+00 1332.8 1398 54.3
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 0.0e+00 1323.5 1112 66.2
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 0.0e+00 1309.7 1087 64.6
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 0.0e+00 1140.6 1098 60.2
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 1.7e-272 943.3 1344 48.7
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 8.4e-264 914.4 1172 48.9
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 2.9e-256 889.4 1134 49.3
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 1.8e-253 880.2 1192 47.0
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 8.7e-253 877.9 1216 47.6
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 2.0e-249 866.7 1206 45.4
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 9.3e-247 857.8 1140 47.4
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 1.8e-245 853.6 1156 50.0
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 4.3e-244 849.0 1352 44.3
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 4.8e-243 845.5 1309 44.5
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 3.4e-241 839.3 1293 42.9
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 7.6e-241 838.2 1184 46.1
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 3.8e-240 835.9 1133 47.9
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 5.0e-240 835.5 1193 48.2
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 3.2e-239 832.8 1373 41.9
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 4.2e-239 832.4 1134 47.4
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 5.5e-239 832.0 1184 44.0
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 6.9e-234 815.1 1346 42.1
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 3.4e-233 812.8 1362 42.0
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 9.4e-231 804.7 1158 44.2
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 8.8e-229 798.1 1194 43.6
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.7e-227 792.7 1207 42.7
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 4.8e-227 792.3 1211 44.3
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 1.5e-225 787.3 1319 42.7
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 6.5e-224 781.9 1333 41.6
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 3.2e-223 779.6 1337 41.4
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 5.5e-223 778.9 1189 43.8
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 1.4e-221 774.2 1271 41.6
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 2.3e-221 773.5 1325 40.5
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 3.0e-221 773.1 1326 42.2
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 3.8e-216 756.1 1333 40.4
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 2.5e-215 753.4 1387 40.2
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 3.6e-214 749.6 1286 43.4
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 3.3e-212 743.0 1274 40.1
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 1.7e-211 740.7 1348 39.9
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 9.1e-210 734.9 1145 44.8
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 1.2e-209 734.6 1313 39.5
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.8e-205 720.7 1099 42.9
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.5e-204 717.6 1384 39.6
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 9.8e-204 714.9 1393 40.8
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 1.1e-202 711.4 1371 38.2
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 7.0e-202 708.8 1348 39.9
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 2.0e-201 707.2 1282 39.9
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 1.3e-200 704.5 1334 38.3
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 5.0e-200 702.6 1241 40.0
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 8.5e-200 701.8 1283 38.9
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 2.3e-197 693.7 1105 41.7
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 5.7e-196 689.1 1281 38.6
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 3.7e-195 686.4 1246 39.2
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 8.0e-190 668.7 1252 39.3
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 1.0e-189 668.3 1238 39.6
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 1.4e-189 667.9 1207 39.9
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 4.0e-189 666.4 1274 38.9
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 1.5e-188 664.5 1355 40.1
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 1.5e-188 664.5 1349 37.1
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 7.5e-188 662.1 1281 38.7
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 1.4e-186 657.9 1282 37.4
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 3.2e-186 656.8 819 48.2
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 3.5e-185 653.3 1205 38.3
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 7.8e-185 652.1 1174 39.9
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 2.2e-179 634.0 943 42.4
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 4.1e-178 629.8 1186 40.1
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 6.6e-176 622.5 1111 39.8
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 7.3e-175 619.0 1167 37.0
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 1.8e-173 614.4 1185 37.6
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 5.2e-173 612.8 1166 38.3
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 4.4e-172 609.8 1172 38.1
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 7.5e-172 609.0 1156 40.4
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 2.2e-171 607.4 1167 36.7
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 4.9e-171 606.3 1181 37.8
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 5.4e-170 602.8 1266 39.0
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 7.1e-170 602.4 1180 38.5
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 6.0e-169 599.4 1154 38.7
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 1.3e-168 598.2 1189 35.5
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 1.1e-167 595.1 1285 35.3
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 1.5e-164 584.7 1367 34.3
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 1.9e-162 577.8 1260 36.0
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 9.9e-148 528.9 775 41.7
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.1e-141 508.8 1169 34.6
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 1.4e-141 508.4 1075 35.0
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 2.7e-137 494.2 683 44.2
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 1.5e-132 478.4 759 40.2
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 8.2e-110 402.9 861 36.5
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 1.6e-105 388.7 1366 29.9
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 1.0e-104 386.0 1070 30.7
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.5e-98 364.8 596 40.3
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 5.0e-83 313.9 606 38.1
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 3.8e-75 287.7 595 37.6
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.3e-66 258.1 351 46.7
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 7.3e-66 256.9 659 35.1
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 2.0e-63 248.8 243 53.5
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 2.0e-60 238.8 461 39.0
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 3.9e-59 234.6 359 41.5
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 9.9e-55 219.9 162 66.7
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 1.1e-48 199.9 812 26.0
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 6.8e-48 197.2 688 26.5
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 1.1e-45 189.9 246 52.0
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.4e-37 162.9 377 32.6
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 1.0e-35 156.8 102 72.5
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 8.1e-33 147.1 546 26.6
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 7.6e-31 140.6 150 48.0
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.3e-30 139.8 679 23.1
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 4.2e-29 134.8 195 41.0
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 1.5e-23 116.3 213 33.8
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 1.1e-18 100.1 106 41.5
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 5.8e-15 87.8 81 45.7
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 7.6e-15 87.4 291 25.1
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 1.7e-14 86.3 176 36.4
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 6.5e-14 84.3 96 46.9
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 6.5e-14 84.3 74 51.4
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 5.5e-13 81.3 77 45.5
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 7.1e-13 80.9 132 38.6
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.2e-12 80.1 77 44.2
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.0e-11 77.0 64 57.8
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 8.7e-11 73.9 169 33.1
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 1.5e-10 73.2 254 29.1
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 5.7e-10 71.2 266 24.1
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 2.2e-09 69.3 146 29.5
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 4.8e-09 68.2 51 60.8
Pp3c7_3950 Physcomitrium patens HOM05D002300 ORTHO05D002340 8.2e-09 67.4 113 30.1
Solyc04g077950.2 Solanum lycopersicum HOM05D001879 ORTHO05D007648 1.0e-06 60.5 109 79.8
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 1.7e-06 59.7 90 41.1


User provided reference genes

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