Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 3.0e-210 734.9 375 100.0
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 7.2e-140 501.1 296 86.8
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 8.9e-138 494.2 325 74.8
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.3e-136 490.3 296 78.4
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 8.3e-136 487.6 296 77.0
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 1.4e-135 486.9 296 77.4
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.8e-135 486.5 296 84.1
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 2.4e-135 486.1 296 77.4
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.2e-134 483.8 296 78.4
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 2.7e-134 482.6 296 76.7
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 1.1e-132 477.2 296 75.3
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 4.3e-132 475.3 296 73.3
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 4.3e-132 475.3 296 74.7
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 7.3e-132 474.6 296 75.0
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 7.3e-132 474.6 296 78.7
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 9.5e-132 474.2 296 77.0
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 9.5e-132 474.2 297 75.8
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 1.2e-131 473.8 296 78.7
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 1.2e-131 473.8 296 75.0
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 1.6e-131 473.4 296 75.0
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 1.6e-131 473.4 296 78.4
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 1.6e-131 473.4 296 78.4
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 1.6e-131 473.4 296 76.0
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 2.8e-131 472.6 296 78.4
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 3.6e-131 472.2 296 73.6
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 4.7e-131 471.9 296 75.3
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 1.8e-130 469.9 313 71.6
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 2.3e-130 469.5 296 74.7
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.1e-130 469.2 309 72.2
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 4.0e-130 468.8 296 74.3
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 4.0e-130 468.8 295 75.6
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 5.2e-130 468.4 296 74.0
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 8.9e-130 467.6 296 73.0
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 1.2e-129 467.2 296 77.0
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 1.5e-129 466.8 296 73.3
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 1.5e-129 466.8 296 74.0
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 2.0e-129 466.5 309 71.8
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 2.0e-129 466.5 331 69.2
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 2.6e-129 466.1 296 73.6
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 4.4e-129 465.3 296 73.3
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 4.4e-129 465.3 297 75.1
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 9.8e-129 464.2 296 72.6
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 2.2e-128 463.0 296 73.0
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 2.2e-128 463.0 296 73.0
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 2.9e-128 462.6 296 77.7
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 3.7e-128 462.2 296 71.6
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 6.4e-128 461.5 296 73.3
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 6.4e-128 461.5 295 76.6
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 1.4e-127 460.3 296 73.3
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 1.4e-127 460.3 310 70.6
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 5.4e-127 458.4 296 71.6
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 9.2e-127 457.6 298 72.8
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 1.2e-126 457.2 296 71.6
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 2.7e-126 456.1 296 72.0
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 2.7e-126 456.1 276 81.2
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 3.5e-126 455.7 296 71.3
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 6.0e-126 454.9 296 72.6
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 7.8e-126 454.5 296 71.3
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 7.8e-126 454.5 296 71.6
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.3e-125 453.8 335 66.6
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 1.3e-125 453.8 296 71.6
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 3.0e-125 452.6 296 71.3
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 3.0e-125 452.6 295 73.6
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 3.9e-125 452.2 296 71.6
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 5.0e-125 451.8 297 71.0
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.5e-124 450.3 276 77.2
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 7.3e-124 448.0 296 71.3
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 2.1e-123 446.4 296 70.9
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 2.1e-123 446.4 299 69.6
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 3.6e-123 445.7 296 71.3
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 3.6e-123 445.7 296 70.6
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 4.7e-123 445.3 296 69.6
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.1e-122 444.1 296 70.9
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 6.8e-122 441.4 296 74.7
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 8.9e-122 441.0 297 70.0
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 1.5e-121 440.3 296 74.0
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 1.5e-121 440.3 276 75.0
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 2.0e-121 439.9 296 69.6
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 5.8e-121 438.3 296 70.6
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 5.8e-121 438.3 296 70.6
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 9.8e-121 437.6 296 74.3
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 9.8e-121 437.6 296 69.3
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.3e-120 437.2 296 74.0
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 2.2e-120 436.4 340 65.3
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.9e-120 436.0 296 69.6
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 3.7e-120 435.6 296 70.3
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 3.7e-120 435.6 296 70.3
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 6.4e-120 434.9 296 69.6
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 6.4e-120 434.9 296 69.6
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 1.9e-119 433.3 296 69.6
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 3.2e-119 432.6 397 58.2
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 4.1e-119 432.2 296 73.0
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 2.7e-118 429.5 366 57.9
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 7.8e-118 427.9 299 69.2
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 8.1e-115 417.9 297 68.4
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 2.4e-111 406.4 295 62.7
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 2.4e-111 406.4 276 69.9
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 1.9e-108 396.7 251 78.5
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 1.2e-107 394.0 254 71.7
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 1.2e-107 394.0 254 71.7
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 1.6e-107 393.7 252 72.2
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 2.8e-107 392.9 276 72.5
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.4e-106 390.6 250 72.4
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 3.4e-105 386.0 295 64.1
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 5.8e-105 385.2 296 58.4
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 7.1e-103 378.3 296 58.8
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 6.6e-101 371.7 264 66.7
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 2.2e-96 356.7 296 55.1
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 3.9e-93 345.9 244 66.4
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 1.0e-85 321.2 212 69.8
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 5.3e-82 308.9 158 91.8
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 1.3e-80 304.3 180 78.9
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.7e-80 303.9 297 54.2
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 5.8e-73 278.9 158 79.1
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.1e-70 270.4 212 63.7
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 1.8e-69 267.3 192 66.7
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 1.5e-68 264.2 218 58.3
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 1.9e-68 263.8 314 44.3
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 1.0e-64 251.5 137 83.9
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.3e-64 251.1 144 83.3
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 1.7e-64 250.8 301 42.2
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 3.2e-55 219.9 163 64.4
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 3.0e-53 213.4 300 39.3
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.3e-48 198.0 118 75.4
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 8.8e-37 158.7 330 28.5
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.8e-35 153.7 115 66.1
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.3e-32 144.8 129 55.8
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 2.9e-32 143.7 244 37.7
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 8.3e-27 125.6 76 76.3
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 1.2e-25 121.7 299 25.8
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.6e-25 121.3 81 63.0
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.8e-21 107.8 65 72.3
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 6.8e-21 105.9 69 72.5
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 1.5e-20 104.8 197 36.0
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.6e-20 104.0 70 70.0
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 2.5e-15 87.4 42 88.1
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 8.0e-14 82.4 46 80.4
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 2.6e-12 77.4 42 73.8
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.2e-11 74.3 58 67.2
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 2.9e-11 73.9 45 73.3
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.9e-10 71.2 140 34.3
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 2.4e-10 70.9 45 71.1
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 2.0e-09 67.8 86 43.0
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 7.8e-09 65.9 60 46.7
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 2.3e-08 64.3 35 74.3
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.3e-08 64.3 33 81.8
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.6e-06 58.2 41 61.0


User provided reference genes

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