Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 1.9e-104 382.5 190 100.0
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 9.1e-99 363.6 190 93.7
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.0e-97 360.1 179 99.4
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 2.9e-92 342.0 179 92.7
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 3.2e-91 338.6 190 87.4
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 2.2e-84 315.8 190 79.5
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 9.5e-80 300.4 190 78.4
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 1.2e-79 300.1 190 77.9
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 4.7e-79 298.1 190 77.9
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.1e-78 297.0 190 75.3
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.4e-78 296.6 190 75.8
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.8e-78 296.2 190 77.4
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.8e-78 296.2 190 77.4
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.8e-78 296.2 190 77.4
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 1.8e-78 296.2 190 75.8
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 2.3e-78 295.8 190 76.3
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 5.2e-78 294.7 190 76.8
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 5.2e-78 294.7 190 76.8
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 6.8e-78 294.3 190 76.8
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 6.8e-78 294.3 190 77.4
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 8.9e-78 293.9 190 75.8
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 8.9e-78 293.9 190 75.8
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 8.9e-78 293.9 190 75.3
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.2e-77 293.5 190 76.3
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 1.2e-77 293.5 190 75.3
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 1.2e-77 293.5 190 74.7
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 1.5e-77 293.1 190 76.3
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 1.5e-77 293.1 190 76.3
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 1.5e-77 293.1 190 76.3
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 1.5e-77 293.1 190 75.3
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 1.5e-77 293.1 190 74.7
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 2.0e-77 292.7 190 75.8
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.0e-77 292.7 190 75.3
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 2.0e-77 292.7 190 75.8
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 2.0e-77 292.7 190 74.7
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 3.4e-77 292.0 190 74.7
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.4e-77 292.0 190 74.7
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 3.4e-77 292.0 190 73.7
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 3.4e-77 292.0 190 76.3
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 4.4e-77 291.6 189 74.6
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 4.4e-77 291.6 190 74.7
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 7.5e-77 290.8 190 75.8
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 7.5e-77 290.8 190 75.3
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 7.5e-77 290.8 190 75.3
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 7.5e-77 290.8 190 75.3
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 9.8e-77 290.4 190 73.7
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 9.8e-77 290.4 190 74.7
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 1.3e-76 290.0 190 75.8
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.3e-76 290.0 190 74.7
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 1.7e-76 289.7 190 75.8
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 1.7e-76 289.7 190 73.2
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 1.7e-76 289.7 190 74.2
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 2.2e-76 289.3 190 75.3
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 2.2e-76 289.3 190 75.3
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 2.2e-76 289.3 190 75.3
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.2e-76 289.3 190 74.2
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.2e-76 289.3 190 74.2
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 2.2e-76 289.3 190 74.2
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 2.9e-76 288.9 190 73.2
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.9e-76 288.9 190 73.2
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 2.9e-76 288.9 190 74.7
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 2.9e-76 288.9 190 74.2
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 2.9e-76 288.9 190 74.2
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 2.9e-76 288.9 190 74.2
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 3.7e-76 288.5 190 74.2
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 3.7e-76 288.5 190 73.2
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 3.7e-76 288.5 191 74.9
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 3.7e-76 288.5 190 73.7
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 4.9e-76 288.1 190 73.7
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 4.9e-76 288.1 190 73.2
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 4.9e-76 288.1 190 73.2
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 6.4e-76 287.7 190 75.3
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 6.4e-76 287.7 190 73.7
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 6.4e-76 287.7 190 74.2
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 8.3e-76 287.3 190 74.7
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 8.3e-76 287.3 190 73.2
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 8.3e-76 287.3 188 73.4
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 1.1e-75 287.0 190 72.6
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 1.9e-75 286.2 188 73.4
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 1.9e-75 286.2 188 73.4
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 2.4e-75 285.8 190 74.2
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 3.2e-75 285.4 190 72.6
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 3.2e-75 285.4 190 72.6
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.2e-75 285.4 188 73.4
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 3.2e-75 285.4 188 73.4
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 3.2e-75 285.4 190 74.2
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 3.2e-75 285.4 190 74.2
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 3.2e-75 285.4 190 74.2
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 4.1e-75 285.0 190 73.7
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 5.4e-75 284.6 190 74.2
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 7.1e-75 284.3 190 74.7
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 7.1e-75 284.3 190 71.6
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 9.2e-75 283.9 190 71.6
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 9.2e-75 283.9 190 71.1
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 1.6e-74 283.1 190 73.2
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 2.7e-74 282.3 188 72.9
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.5e-74 282.0 190 72.6
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 4.6e-74 281.6 190 73.7
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 4.6e-74 281.6 190 73.7
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 4.6e-74 281.6 190 71.6
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 7.8e-74 280.8 190 72.1
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 7.8e-74 280.8 190 72.6
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 1.0e-73 280.4 190 72.1
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.3e-73 280.0 190 70.0
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 1.7e-73 279.6 191 73.3
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 3.0e-73 278.9 190 71.6
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 3.9e-73 278.5 190 73.2
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 6.6e-73 277.7 190 70.5
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 8.6e-73 277.3 190 73.7
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 1.1e-72 276.9 182 74.2
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 1.9e-72 276.2 190 70.5
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 2.5e-72 275.8 181 73.5
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 2.5e-72 275.8 190 70.5
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 5.6e-72 274.6 191 73.3
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 4.7e-71 271.6 191 74.3
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 4.7e-71 271.6 190 70.5
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 8.1e-71 270.8 190 68.4
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.4e-70 270.0 191 71.2
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 2.3e-70 269.2 191 72.3
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 5.2e-70 268.1 171 74.3
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 5.2e-70 268.1 182 69.8
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 4.4e-69 265.0 190 71.6
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 6.4e-68 261.2 190 67.4
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 1.4e-67 260.0 190 66.3
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 2.4e-67 259.2 190 66.3
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 4.1e-67 258.5 190 65.8
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.4e-67 258.1 176 71.6
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 2.1e-66 256.1 190 66.8
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 2.3e-65 252.7 189 63.0
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 9.6e-64 247.3 190 65.3
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 6.2e-63 244.6 189 61.4
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.4e-62 243.4 190 63.7
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.4e-62 243.4 190 63.7
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 5.8e-61 238.0 190 60.5
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 5.8e-61 238.0 189 63.0
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.3e-60 236.9 190 61.6
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 1.7e-60 236.5 190 60.5
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.7e-60 236.5 190 65.8
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 4.9e-60 235.0 179 68.2
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 4.9e-60 235.0 190 64.2
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.9e-59 233.0 190 64.2
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 2.1e-58 229.6 190 57.9
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.6e-55 219.9 190 54.7
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 6.9e-54 214.5 183 59.0
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 1.5e-53 213.4 179 58.1
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 2.9e-52 209.1 168 64.9
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.1e-43 180.6 190 52.1
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 3.0e-41 172.6 189 45.5
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 7.4e-40 167.9 121 66.9
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 8.1e-39 164.5 115 67.8
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 1.7e-36 156.8 109 69.7
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.2e-34 150.6 175 50.3
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 8.2e-31 137.9 123 60.2
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.4e-30 137.1 190 44.2
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 3.1e-30 136.0 129 53.5
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 4.5e-29 132.1 85 74.1
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 6.7e-25 118.2 78 70.5
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 5.9e-21 105.1 66 75.8
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 2.3e-17 93.2 92 55.4
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 6.1e-10 68.6 43 76.7
Cfa022336 Carpinus fangiana HOM05D004362 ORTHO05D122733 4.8e-07 58.9 75 45.3


User provided reference genes

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