Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 0.0e+00 3649.4 2085 100.0
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 0.0e+00 1869.7 2006 57.8
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 0.0e+00 1542.3 2107 51.5
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 0.0e+00 1478.4 1618 57.9
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 0.0e+00 1091.6 2258 38.8
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 3.4e-162 577.8 2050 33.3
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 2.5e-157 561.6 2145 31.6
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 1.3e-153 549.3 1928 32.4
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 4.7e-148 530.8 1988 31.3
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 6.0e-143 513.8 1956 31.5
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 2.3e-142 511.9 1831 32.3
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 5.6e-141 507.3 2035 30.6
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 9.9e-138 496.5 1895 31.5
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.3e-137 496.1 802 47.0
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 2.9e-137 495.0 1964 31.0
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 6.4e-137 493.8 2046 30.2
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 1.9e-136 492.3 2087 30.2
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 3.2e-136 491.5 1966 29.2
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 3.2e-136 491.5 2187 30.4
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 9.3e-136 490.0 1936 31.5
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 2.1e-135 488.8 1920 31.4
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 3.5e-135 488.0 904 42.6
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 6.0e-135 487.3 1741 31.1
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 5.6e-133 480.7 1104 37.0
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 3.7e-132 478.0 761 47.7
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 3.7e-132 478.0 947 41.8
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.8e-131 475.7 970 41.9
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.8e-131 475.7 989 41.3
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 6.9e-131 473.8 1939 30.5
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 3.4e-130 471.5 740 47.6
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.3e-129 469.5 1943 30.8
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 4.9e-129 467.6 1087 40.2
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 2.4e-128 465.3 785 44.7
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 1.2e-127 463.0 2024 30.2
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 2.1e-127 462.2 2072 29.8
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 6.0e-127 460.7 2050 29.9
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.8e-126 459.1 1944 30.6
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 3.0e-126 458.4 1853 30.6
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 5.1e-126 457.6 2054 29.9
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.3e-124 453.0 1945 30.5
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 1.6e-124 452.6 2092 30.4
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 2.4e-123 448.7 860 44.3
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 4.5e-122 444.5 2033 30.1
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.7e-121 442.6 2044 29.9
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 1.2e-119 436.4 2108 29.0
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 6.7e-118 430.6 893 43.0
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 2.2e-116 425.6 886 42.3
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 9.0e-115 420.2 1925 30.3
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 1.3e-113 416.4 1977 29.4
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 2.1e-111 409.1 1034 37.5
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 3.6e-111 408.3 1870 30.8
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 2.3e-110 405.6 829 40.3
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 3.9e-110 404.8 1279 34.6
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 1.9e-109 402.5 806 41.3
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 2.2e-108 399.1 503 55.7
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 1.1e-107 396.7 2031 29.8
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 9.1e-107 393.7 1946 29.2
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 2.0e-106 392.5 764 40.8
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 1.3e-105 389.8 980 37.7
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 5.0e-105 387.9 787 40.8
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 6.5e-105 387.5 1882 28.9
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.9e-104 386.0 924 39.7
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 3.2e-104 385.2 2047 29.2
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 2.1e-103 382.5 952 37.7
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 3.6e-103 381.7 964 34.9
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 4.7e-103 381.3 917 38.3
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 6.1e-103 380.9 1895 29.9
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 7.9e-103 380.6 796 39.4
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 1.0e-102 380.2 964 34.9
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 6.7e-102 377.5 1185 35.7
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 5.7e-101 374.4 831 39.4
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 1.7e-100 372.9 1909 30.1
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 2.2e-100 372.5 1958 29.1
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 2.2e-100 372.5 1928 29.5
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 2.2e-100 372.5 748 41.3
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 8.2e-100 370.5 942 39.0
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.1e-99 370.2 869 38.7
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 1.1e-99 370.2 928 38.0
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 1.4e-99 369.8 933 35.5
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 1.2e-98 366.7 489 53.2
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.5e-98 366.3 884 35.4
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 3.4e-98 365.2 1947 29.0
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 1.4e-96 359.8 788 39.8
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 3.2e-96 358.6 1886 28.0
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 7.2e-96 357.5 1007 35.9
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 1.6e-95 356.3 962 33.9
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 6.1e-95 354.4 788 39.7
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 1.8e-94 352.8 659 37.9
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 1.8e-94 352.8 964 33.8
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 3.9e-94 351.7 1899 28.9
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 6.7e-94 350.9 712 36.8
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 6.3e-92 344.4 814 38.8
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 8.2e-92 344.0 964 33.5
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 1.4e-91 343.2 984 33.2
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 1.2e-87 330.1 933 35.5
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 2.4e-83 315.8 771 37.7
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.6e-79 303.1 635 37.3
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 4.4e-77 295.0 497 40.6
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 1.3e-76 293.5 825 34.9
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 2.2e-76 292.7 768 37.4
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 3.1e-75 288.9 829 35.6
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 7.2e-72 277.7 828 36.2
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 8.0e-71 274.2 850 34.2
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 8.9e-70 270.8 854 35.2
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 8.9e-70 270.8 1706 26.8
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 2.8e-68 265.8 1905 26.8
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 1.4e-67 263.5 733 35.7
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 5.9e-66 258.1 256 54.7
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 1.2e-63 250.4 346 51.2
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 2.8e-63 249.2 570 35.3
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.7e-57 229.9 663 35.3
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 6.2e-55 221.5 1770 25.6
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 5.2e-54 218.4 282 56.4
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 1.7e-52 213.4 518 39.4
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 5.2e-38 165.2 228 43.9
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 6.8e-38 164.9 915 29.7
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 3.8e-36 159.1 324 36.4
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 1.4e-35 157.1 94 78.7
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 1.2e-34 154.1 222 41.0
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 1.3e-33 150.6 149 53.0
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 2.6e-29 136.3 1749 25.6
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 1.1e-22 114.4 534 33.5
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 4.5e-21 109.0 207 48.8
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 8.4e-20 104.8 249 32.1
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 8.4e-20 104.8 129 45.0
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 1.5e-16 94.0 804 23.0
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 3.1e-14 86.3 102 52.9
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 1.7e-12 80.5 135 37.0
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 6.4e-12 78.6 417 27.6
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.1e-11 77.8 109 46.8
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 3.5e-10 72.8 495 27.7
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.1e-06 61.2 129 35.7
Cre03.g154900 Chlamydomonas reinhardtii HOM05D000237 ORTHO05D006530 1.4e-06 60.8 72 41.7
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 6.9e-06 58.5 599 24.5


User provided reference genes

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