Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 2.0e-158 562.4 282 100.0
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 6.9e-119 431.0 261 85.1
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 6.5e-117 424.5 261 84.7
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 9.4e-108 394.0 266 78.6
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 1.6e-107 393.3 253 77.1
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.3e-104 383.6 255 76.1
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 5.3e-103 378.3 259 74.1
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 2.0e-102 376.3 231 81.8
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 4.5e-102 375.2 231 81.4
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 7.7e-102 374.4 252 76.6
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 7.7e-102 374.4 254 75.2
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.3e-101 373.6 255 76.1
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 1.7e-101 373.2 259 73.7
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 2.9e-101 372.5 253 75.1
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 3.8e-101 372.1 252 77.0
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 3.8e-101 372.1 252 76.2
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 5.0e-101 371.7 262 72.5
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 6.5e-101 371.3 251 73.7
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 6.5e-101 371.3 253 77.9
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 6.5e-101 371.3 256 76.2
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 1.5e-100 370.2 258 75.6
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.5e-100 370.2 237 80.6
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.9e-100 369.8 258 75.2
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 5.5e-100 368.2 261 74.7
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 7.2e-100 367.9 258 74.4
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 1.2e-99 367.1 243 77.8
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.1e-99 366.3 253 72.7
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 2.7e-99 365.9 259 74.5
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 3.6e-99 365.5 244 76.2
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 3.6e-99 365.5 255 74.9
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 3.6e-99 365.5 260 72.7
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 3.6e-99 365.5 254 74.4
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 4.7e-99 365.2 255 73.3
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 6.1e-99 364.8 255 72.9
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 1.4e-98 363.6 226 81.4
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 2.3e-98 362.8 212 86.3
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 2.3e-98 362.8 258 72.1
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 2.3e-98 362.8 259 71.8
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 3.0e-98 362.5 249 74.3
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 3.0e-98 362.5 260 73.1
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 4.0e-98 362.1 275 69.8
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 5.2e-98 361.7 258 72.1
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 6.7e-98 361.3 223 79.8
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 6.7e-98 361.3 215 81.9
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 8.8e-98 360.9 258 72.1
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 1.1e-97 360.5 256 71.5
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 1.5e-97 360.1 224 80.8
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 2.0e-97 359.8 206 85.9
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.0e-97 359.8 279 68.8
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 2.0e-97 359.8 207 84.1
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 2.6e-97 359.4 261 72.0
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 3.3e-97 359.0 274 69.3
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 4.4e-97 358.6 216 83.3
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 7.4e-97 357.8 261 72.0
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 9.7e-97 357.5 266 72.2
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 1.3e-96 357.1 275 70.5
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 1.3e-96 357.1 219 80.8
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 1.3e-96 357.1 251 72.9
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 1.3e-96 357.1 250 73.6
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.8e-96 355.9 207 84.1
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 3.7e-96 355.5 263 68.8
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 6.3e-96 354.8 252 71.0
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 6.3e-96 354.8 219 80.4
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 8.2e-96 354.4 210 81.4
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 8.2e-96 354.4 211 82.9
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 1.1e-95 354.0 235 77.0
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.1e-95 354.0 211 82.5
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 1.8e-95 353.2 219 79.0
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 3.1e-95 352.4 267 70.4
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.1e-95 352.4 215 80.9
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 4.1e-95 352.1 207 84.1
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 4.1e-95 352.1 208 82.7
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 4.1e-95 352.1 216 81.9
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 5.3e-95 351.7 213 81.2
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 7.0e-95 351.3 212 81.6
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 7.0e-95 351.3 260 71.9
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 9.1e-95 350.9 252 70.2
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 1.2e-94 350.5 259 71.0
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.6e-94 350.1 202 83.2
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 2.0e-94 349.7 210 81.9
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 2.0e-94 349.7 210 81.9
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.0e-94 349.7 211 81.5
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 3.5e-94 349.0 221 78.3
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 4.5e-94 348.6 211 80.6
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.0e-93 347.4 204 83.3
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 1.0e-93 347.4 211 80.1
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.3e-93 347.1 211 81.0
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 1.3e-93 347.1 212 82.5
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 1.7e-93 346.7 211 81.0
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 1.7e-93 346.7 217 77.4
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 1.7e-93 346.7 217 77.4
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.7e-93 346.7 217 77.9
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.7e-93 346.7 236 75.4
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.9e-93 345.9 206 82.0
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 5.0e-93 345.1 218 76.6
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 5.0e-93 345.1 191 85.9
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 5.0e-93 345.1 244 73.0
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 6.5e-93 344.7 212 80.7
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.5e-93 344.7 206 82.5
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.5e-93 344.7 206 82.5
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 8.5e-93 344.4 209 81.3
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 1.1e-92 344.0 219 76.7
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 2.5e-92 342.8 252 73.8
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 3.2e-92 342.4 211 79.6
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 4.2e-92 342.0 210 80.0
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 5.5e-92 341.7 211 80.6
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 7.2e-92 341.3 218 78.4
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 7.2e-92 341.3 298 63.1
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 1.2e-91 340.5 211 79.1
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 1.6e-91 340.1 191 85.3
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 4.7e-91 338.6 213 78.4
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 4.0e-90 335.5 260 66.9
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 5.2e-90 335.1 191 84.3
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 2.8e-88 329.3 217 75.1
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 1.4e-87 327.0 245 71.0
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 1.0e-85 320.9 191 80.1
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 2.7e-83 312.8 191 79.1
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 2.7e-83 312.8 191 78.5
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 4.0e-82 308.9 253 68.4
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 8.8e-82 307.8 261 65.9
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.4e-81 305.8 297 58.2
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 4.4e-81 305.4 207 74.4
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 2.4e-79 299.7 227 67.0
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 1.2e-78 297.4 159 88.7
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 3.5e-78 295.8 199 74.9
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.5e-78 295.8 213 71.4
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 1.3e-77 293.9 176 81.8
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 8.6e-77 291.2 260 63.5
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 2.5e-76 289.7 212 68.9
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 2.1e-75 286.6 227 63.0
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 4.7e-75 285.4 154 88.3
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.7e-75 285.4 278 60.4
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 6.1e-75 285.0 208 70.7
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 1.4e-74 283.9 159 86.8
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 6.8e-74 281.6 174 77.0
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.8e-71 273.5 259 59.5
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 7.0e-71 271.6 254 61.0
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 8.6e-69 264.6 148 84.5
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 1.1e-68 264.2 213 65.3
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 2.1e-67 260.0 185 73.0
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.5e-65 253.8 213 64.3
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 9.8e-65 251.1 178 73.0
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 1.3e-64 250.8 215 62.3
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.1e-63 247.7 152 79.6
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.1e-63 247.7 152 80.3
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 1.1e-58 231.1 253 54.9
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 6.4e-56 221.9 174 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 6.0e-54 215.3 152 66.4
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 7.8e-54 214.9 160 70.0
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 1.1e-52 211.1 256 41.8
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 3.7e-48 196.1 125 76.8
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 9.2e-47 191.4 346 40.5
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 1.2e-38 164.5 145 57.9
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 1.3e-35 154.5 184 41.3
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 7.6e-33 145.2 196 39.3
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 6.4e-32 142.1 218 39.0
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 9.3e-31 138.3 84 82.1
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 4.6e-22 109.4 62 83.9
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 2.3e-21 107.1 62 82.3
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 8.7e-21 105.1 126 54.0
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 3.1e-18 96.7 59 83.1
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.0e-14 82.4 132 42.4
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.0e-13 80.1 66 60.6
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 3.7e-11 73.2 118 39.8
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.1e-10 70.1 40 80.0
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 4.1e-10 69.7 55 65.5
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 9.0e-10 68.6 36 83.3
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 9.0e-10 68.6 37 83.8
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 1.0e-08 65.1 32 93.8
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 7.2e-07 58.9 42 64.3
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 1.6e-06 57.8 31 83.9
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.5e-06 56.6 34 73.5


User provided reference genes

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