Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 0.0e+00 1187.9 606 100.0
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 4.6e-277 957.6 606 81.0
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 1.9e-267 925.6 603 79.3
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 2.4e-254 882.1 611 73.8
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 3.6e-250 868.2 611 71.2
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 6.2e-250 867.5 619 72.2
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 1.1e-249 866.7 612 70.8
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 1.5e-248 862.8 616 70.5
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 3.4e-248 861.7 611 70.5
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 4.9e-247 857.8 622 69.5
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 1.4e-246 856.3 614 70.2
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.4e-246 856.3 613 70.0
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 2.4e-246 855.5 616 71.3
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 9.3e-246 853.6 617 69.7
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 1.2e-245 853.2 611 68.2
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.3e-244 849.7 610 70.5
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-244 849.0 614 70.0
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 8.7e-244 847.0 611 68.7
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 1.5e-243 846.3 616 69.0
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 2.5e-243 845.5 614 69.7
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 3.3e-243 845.1 607 69.4
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 9.6e-243 843.6 614 70.4
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 2.8e-242 842.0 613 69.5
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 1.1e-241 840.1 607 69.2
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 3.1e-241 838.6 617 68.4
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 4.0e-241 838.2 612 69.3
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 9.0e-241 837.0 614 69.1
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 1.5e-240 836.3 613 68.8
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 2.0e-240 835.9 613 69.0
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 2.6e-240 835.5 617 68.2
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 2.6e-240 835.5 612 68.6
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 5.8e-240 834.3 611 69.6
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 1.0e-239 833.6 613 69.0
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 2.2e-239 832.4 613 69.0
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 3.8e-239 831.6 616 68.3
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 6.5e-239 830.9 616 68.2
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 6.5e-239 830.9 616 68.2
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.1e-238 830.1 616 68.2
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.1e-238 830.1 614 68.4
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.2e-237 826.6 626 68.4
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 8.7e-236 820.5 688 62.1
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.9e-235 819.3 615 68.0
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 4.3e-235 818.1 613 68.0
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 4.3e-235 818.1 611 67.3
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 5.7e-235 817.8 614 67.8
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 2.8e-234 815.5 614 67.6
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 2.0e-232 809.3 616 65.6
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 3.4e-232 808.5 617 66.3
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 4.5e-232 808.1 612 66.2
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.7e-231 806.2 612 67.0
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 2.5e-230 802.4 616 67.0
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 5.5e-230 801.2 615 66.7
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 7.1e-230 800.8 611 66.8
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 2.1e-229 799.3 618 65.4
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 4.6e-229 798.1 614 66.4
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 6.1e-229 797.7 611 66.9
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 3.9e-228 795.0 612 66.3
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 4.1e-225 785.0 607 65.2
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 2.6e-224 782.3 742 57.4
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 7.7e-224 780.8 610 63.9
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.3e-223 780.0 612 64.5
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 1.3e-223 780.0 595 66.2
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.3e-223 780.0 621 64.3
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.7e-223 779.6 612 64.7
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 2.2e-223 779.2 613 63.8
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 2.9e-223 778.9 611 65.1
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 3.8e-223 778.5 571 69.4
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 6.5e-223 777.7 609 64.4
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 8.5e-223 777.3 610 64.6
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 8.5e-223 777.3 611 63.8
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.4e-222 776.5 621 63.9
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 1.6e-221 773.1 603 66.3
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 4.6e-221 771.5 611 64.0
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 4.6e-221 771.5 614 63.7
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 6.1e-221 771.2 611 63.8
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 6.1e-221 771.2 608 63.5
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 1.4e-220 770.0 611 63.8
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 1.8e-220 769.6 609 64.2
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 1.8e-220 769.6 615 63.7
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.3e-218 763.5 566 67.0
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 4.1e-217 758.4 574 68.8
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 5.5e-214 748.0 564 66.0
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 5.5e-214 748.0 609 63.4
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 8.8e-212 740.7 551 68.8
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 4.4e-211 738.4 593 63.9
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 3.7e-202 708.8 549 65.0
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 7.0e-201 704.5 614 60.4
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.4e-193 680.2 615 59.3
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 3.8e-191 672.2 501 68.7
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 2.0e-187 659.8 621 56.0
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 2.4e-177 626.3 609 55.8
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 7.8e-168 594.7 677 47.3
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 4.4e-163 578.9 684 50.4
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.7e-162 577.0 616 52.6
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 3.2e-153 546.2 496 59.7
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.2e-147 527.7 358 71.8
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 3.5e-144 516.2 506 54.0
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-140 504.2 375 67.2
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 5.3e-140 502.3 387 66.4
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 9.3e-129 464.9 360 66.7
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 1.0e-122 444.9 358 67.3
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 5.9e-115 419.1 430 52.8
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 9.0e-108 395.2 382 56.3
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 3.8e-106 389.8 257 74.3
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 4.2e-105 386.3 651 38.6
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 4.2e-105 386.3 326 62.9
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 3.6e-104 383.3 257 72.8
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.5e-97 360.5 256 68.4
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 1.3e-90 338.2 244 68.0
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 4.0e-87 326.6 231 68.8
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 1.8e-79 301.2 623 33.1
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 8.3e-77 292.4 179 77.1
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 5.9e-59 233.0 219 58.0
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-55 221.9 216 57.4
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 4.4e-54 216.9 179 62.0
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 5.8e-54 216.5 110 94.5
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 5.6e-49 199.9 158 63.3
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.1e-44 185.7 111 80.2
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 2.4e-44 184.5 111 81.1
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 4.6e-43 180.3 109 78.9
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 1.3e-42 178.7 109 78.0
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-42 178.3 111 77.5
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 1.9e-36 158.3 102 72.5
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 3.9e-34 150.6 137 59.9
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 2.5e-33 147.9 99 73.7
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 2.2e-29 134.8 120 57.5
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 3.2e-28 131.0 82 72.0
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 5.4e-28 130.2 83 74.7
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 3.6e-24 117.5 120 54.2
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 4.8e-24 117.1 71 74.6
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 8.1e-24 116.3 69 81.2
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 1.4e-23 115.5 507 25.0
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 9.0e-23 112.8 134 46.3
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 4.5e-22 110.5 81 61.7
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 4.5e-22 110.5 81 61.7
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-19 101.3 66 72.7
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 3.5e-19 100.9 83 59.0
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-18 99.4 55 76.4
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 5.8e-14 83.6 55 74.5
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.9e-13 81.3 141 41.8
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 4.9e-13 80.5 174 29.9
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-11 74.7 40 82.5
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 3.0e-10 71.2 41 75.6
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 5.1e-10 70.5 41 80.5
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 1.9e-09 68.6 183 29.0
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 2.5e-09 68.2 51 62.7
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 4.3e-09 67.4 41 68.3
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.3e-08 65.9 47 66.0
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 6.2e-08 63.5 45 71.1
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 4.5e-06 57.4 46 58.7


User provided reference genes

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