Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 1.6e-28 128.6 63 100.0
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 1.8e-22 108.6 58 93.1
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 1.8e-22 108.6 59 93.2
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 6.7e-22 106.7 53 96.2
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 7.4e-21 103.2 58 86.2
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 9.6e-21 102.8 59 84.7
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 2.8e-20 101.3 58 84.5
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 2.8e-20 101.3 58 84.5
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 2.8e-20 101.3 58 82.8
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 3.1e-19 97.8 58 79.3
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 3.1e-19 97.8 56 82.1
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 5.3e-19 97.1 58 79.3
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 5.3e-19 97.1 58 79.3
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 5.3e-19 97.1 56 80.4
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 6.9e-19 96.7 58 77.6
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 6.9e-19 96.7 56 82.1
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 6.9e-19 96.7 56 82.1
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 9.0e-19 96.3 58 79.3
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 7.6e-18 93.2 58 79.3
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 1.3e-17 92.4 58 77.6
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 1.3e-17 92.4 58 79.3
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 1.7e-17 92.0 58 79.3
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 1.7e-17 92.0 58 74.1
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 1.7e-17 92.0 58 77.6
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 1.7e-17 92.0 58 77.6
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 2.2e-17 91.7 58 79.3
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 2.2e-17 91.7 58 79.3
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 2.2e-17 91.7 58 79.3
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 2.2e-17 91.7 58 79.3
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 2.9e-17 91.3 58 79.3
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 2.9e-17 91.3 58 75.9
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 5.0e-17 90.5 58 79.3
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 5.0e-17 90.5 58 74.1
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 5.0e-17 90.5 58 77.6
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 6.5e-17 90.1 58 74.1
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 8.5e-17 89.7 58 74.1
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 8.5e-17 89.7 58 74.1
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 8.5e-17 89.7 58 74.1
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 8.5e-17 89.7 58 74.1
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 8.5e-17 89.7 58 74.1
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 8.5e-17 89.7 58 74.1
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 8.5e-17 89.7 58 74.1
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 8.5e-17 89.7 56 75.0
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 8.5e-17 89.7 58 75.9
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 8.5e-17 89.7 58 75.9
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 8.5e-17 89.7 58 74.1
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 1.1e-16 89.4 58 75.9
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.1e-16 89.4 58 75.9
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.1e-16 89.4 58 75.9
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.1e-16 89.4 58 75.9
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.1e-16 89.4 58 75.9
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 1.1e-16 89.4 58 74.1
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 1.1e-16 89.4 55 76.4
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 1.1e-16 89.4 58 74.1
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 1.4e-16 89.0 56 78.6
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 1.4e-16 89.0 58 74.1
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 1.4e-16 89.0 58 72.4
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.4e-16 89.0 58 74.1
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.4e-16 89.0 58 74.1
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 1.4e-16 89.0 58 74.1
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 1.9e-16 88.6 58 74.1
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.9e-16 88.6 58 72.4
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 2.5e-16 88.2 60 73.3
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 3.2e-16 87.8 58 72.4
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 3.2e-16 87.8 58 72.4
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 3.2e-16 87.8 58 72.4
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 3.2e-16 87.8 58 77.6
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 3.2e-16 87.8 58 72.4
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 3.2e-16 87.8 58 72.4
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 3.2e-16 87.8 58 72.4
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 4.2e-16 87.4 53 73.6
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 4.2e-16 87.4 58 72.4
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 5.5e-16 87.0 58 72.4
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 7.2e-16 86.7 53 81.1
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 1.2e-15 85.9 57 71.9
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.6e-15 85.5 60 73.3
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 1.6e-15 85.5 60 73.3
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 2.1e-15 85.1 60 73.3
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 2.1e-15 85.1 60 73.3
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 2.1e-15 85.1 58 70.7
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 3.6e-15 84.3 60 70.0
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 3.6e-15 84.3 60 70.0
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 4.6e-15 84.0 49 77.6
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 7.9e-15 83.2 58 67.2
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 1.0e-14 82.8 60 71.7
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 1.0e-14 82.8 60 71.7
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 1.0e-14 82.8 60 71.7
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 1.0e-14 82.8 60 71.7
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 1.3e-14 82.4 60 70.0
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 1.8e-14 82.0 60 70.0
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 3.0e-14 81.3 60 68.3
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 3.0e-14 81.3 60 68.3
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 3.0e-14 81.3 60 68.3
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 5.1e-14 80.5 60 66.7
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 6.7e-14 80.1 58 60.3
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 7.4e-13 76.6 59 61.0
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 1.6e-12 75.5 58 65.5
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 2.8e-12 74.7 47 80.9
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 6.3e-12 73.6 56 66.1
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 1.8e-11 72.0 56 66.1
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 2.4e-11 71.6 51 70.6
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 3.1e-11 71.2 54 59.3
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.1e-11 71.2 56 66.1
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 6.9e-11 70.1 52 63.5
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 4.5e-10 67.4 47 70.2
Aqoxy6G00317 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 1.0e-09 66.2 41 80.5
Nitab4.5_0002081g0130 Nicotiana tabacum HOM05D005020 ORTHO05D006017 5.0e-09 63.9 47 70.2
Ca_29279_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 1.9e-08 62.0 47 61.7
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 1.9e-08 62.0 55 58.2
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 3.2e-08 61.2 56 57.1
SMO196G0139 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 7.2e-08 60.1 54 51.9
SGA_v2.0_scaffold371G50143 Striga asiatica HOM05D005020 ORTHO05D006017 1.2e-07 59.3 49 59.2
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 1.2e-07 59.3 45 62.2
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 2.7e-07 58.2 54 53.7
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 7.9e-07 56.6 45 60.0
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 7.9e-07 56.6 45 60.0
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 7.9e-07 56.6 45 57.8
THA.LOC104802731 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 7.9e-07 56.6 59 54.2
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 1.0e-06 56.2 45 57.8
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 1.0e-06 56.2 45 57.8
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 3.9e-06 54.3 54 51.9
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 5.1e-06 53.9 43 58.1
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 6.7e-06 53.5 52 51.9


User provided reference genes

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