Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 8.6e-81 303.5 145 100.0
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 6.2e-55 217.6 129 82.2
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.8e-54 216.1 137 75.2
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 6.4e-52 207.6 176 62.5
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 1.2e-45 186.8 143 67.1
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.6e-45 185.7 124 75.0
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 2.6e-45 185.7 124 75.0
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 4.4e-45 184.9 136 67.6
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 7.6e-45 184.1 143 67.1
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 9.9e-45 183.7 121 74.4
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 9.9e-45 183.7 138 68.1
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.3e-44 183.3 124 74.2
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 1.3e-44 183.3 143 67.8
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 1.7e-44 183.0 123 74.8
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 2.2e-44 182.6 143 66.4
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 3.8e-44 181.8 144 66.0
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 4.9e-44 181.4 123 73.2
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 1.1e-43 180.3 122 73.0
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.1e-43 180.3 126 69.8
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.1e-43 180.3 143 65.7
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.4e-43 179.9 126 69.0
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 2.4e-43 179.1 125 70.4
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.4e-43 179.1 146 64.4
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 2.4e-43 179.1 109 77.1
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 3.2e-43 178.7 114 76.3
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 3.2e-43 178.7 123 71.5
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 3.2e-43 178.7 138 64.5
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 3.2e-43 178.7 142 66.9
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 4.2e-43 178.3 110 75.5
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 5.4e-43 177.9 139 65.5
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 7.1e-43 177.6 121 69.4
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 7.1e-43 177.6 109 76.1
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 7.1e-43 177.6 109 76.1
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 9.3e-43 177.2 143 64.3
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 9.3e-43 177.2 109 74.3
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 9.3e-43 177.2 110 77.3
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 1.6e-42 176.4 141 64.5
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 3.5e-42 175.3 111 74.8
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 4.6e-42 174.9 109 74.3
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 4.6e-42 174.9 123 71.5
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 6.0e-42 174.5 129 67.4
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 6.0e-42 174.5 145 60.7
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 6.0e-42 174.5 126 68.3
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 1.0e-41 173.7 109 74.3
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 1.0e-41 173.7 109 72.5
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 1.3e-41 173.3 128 68.8
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.7e-41 172.9 144 63.2
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 3.0e-41 172.2 110 73.6
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 3.9e-41 171.8 132 66.7
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 3.9e-41 171.8 128 68.8
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 5.1e-41 171.4 109 74.3
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 5.1e-41 171.4 110 74.5
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.1e-41 171.4 125 67.2
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 6.6e-41 171.0 113 71.7
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 6.6e-41 171.0 136 63.2
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.6e-41 171.0 136 63.2
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 6.6e-41 171.0 122 68.0
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 8.7e-41 170.6 128 68.0
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 8.7e-41 170.6 146 63.7
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 1.1e-40 170.2 129 67.4
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 1.1e-40 170.2 129 67.4
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 1.1e-40 170.2 114 71.9
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 1.1e-40 170.2 116 70.7
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 1.1e-40 170.2 110 70.9
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 1.5e-40 169.9 128 67.2
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 1.5e-40 169.9 148 63.5
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 1.5e-40 169.9 128 69.5
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.9e-40 169.5 135 64.4
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 1.9e-40 169.5 124 70.2
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.9e-40 169.5 125 68.8
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 2.5e-40 169.1 111 73.0
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 2.5e-40 169.1 135 65.2
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 3.3e-40 168.7 123 69.1
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 3.3e-40 168.7 123 69.1
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 4.3e-40 168.3 145 62.1
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 5.6e-40 167.9 109 75.2
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 5.6e-40 167.9 125 66.4
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 7.3e-40 167.5 142 60.6
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 7.3e-40 167.5 147 61.2
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 7.3e-40 167.5 123 66.7
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 7.3e-40 167.5 123 66.7
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 2.1e-39 166.0 124 66.9
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 2.1e-39 166.0 145 60.7
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.1e-39 166.0 122 67.2
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 2.8e-39 165.6 111 73.0
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.8e-39 165.6 110 72.7
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 8.1e-39 164.1 120 66.7
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 8.1e-39 164.1 122 65.6
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.1e-39 164.1 134 61.9
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 8.1e-39 164.1 124 67.7
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 1.1e-38 163.7 148 60.1
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.1e-38 163.7 122 65.6
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.1e-38 163.7 129 65.9
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.1e-38 163.7 151 58.3
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 1.1e-38 163.7 125 67.2
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.1e-38 163.7 111 72.1
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 1.4e-38 163.3 128 64.8
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.4e-38 163.3 123 66.7
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.4e-38 163.3 122 65.6
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 1.4e-38 163.3 124 66.1
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 1.4e-38 163.3 124 66.1
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 2.4e-38 162.5 124 65.3
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 4.0e-38 161.8 123 66.7
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 5.3e-38 161.4 115 70.4
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 6.9e-38 161.0 134 63.4
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 9.0e-38 160.6 111 70.3
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 2.0e-37 159.5 111 70.3
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 2.6e-37 159.1 111 69.4
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.8e-37 157.9 128 62.5
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 5.8e-37 157.9 125 64.8
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 7.6e-37 157.5 114 65.8
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 1.3e-36 156.8 111 68.5
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.9e-36 155.6 110 66.4
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 2.9e-36 155.6 123 65.0
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 8.4e-36 154.1 119 64.7
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.9e-35 152.9 124 66.9
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 2.4e-35 152.5 107 69.2
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 7.1e-35 151.0 105 70.5
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 7.1e-35 151.0 102 74.5
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.2e-34 150.2 144 56.2
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 3.5e-34 148.7 121 62.0
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 6.7e-33 144.4 95 72.6
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 8.7e-33 144.1 130 58.5
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 8.7e-33 144.1 130 58.5
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 8.7e-33 144.1 94 73.4
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 1.5e-32 143.3 204 45.6
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.9e-32 142.9 136 57.4
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 3.3e-32 142.1 122 60.7
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 4.3e-32 141.7 107 70.1
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 9.6e-32 140.6 100 68.0
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.8e-31 139.0 144 54.2
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 8.1e-31 137.5 117 56.4
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.4e-30 136.0 111 61.3
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 5.3e-30 134.8 117 58.1
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 1.2e-29 133.7 93 71.0
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 1.5e-29 133.3 93 68.8
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 4.5e-29 131.7 144 50.7
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 7.6e-29 131.0 95 65.3
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.9e-29 130.6 94 64.9
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.7e-28 129.8 136 52.2
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.2e-28 129.4 136 52.2
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.2e-28 129.4 136 52.2
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 2.4e-27 125.9 89 67.4
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 5.5e-27 124.8 129 55.0
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 1.0e-25 120.6 116 54.3
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 3.9e-25 118.6 112 53.6
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 2.8e-23 112.5 107 55.1
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 4.0e-22 108.6 135 44.4
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 2.9e-20 102.4 63 74.6
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 5.5e-19 98.2 58 77.6
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 7.1e-19 97.8 70 74.3
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 9.3e-19 97.4 110 46.4
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 2.1e-18 96.3 53 79.2
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 6.7e-17 91.3 65 69.2
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 5.7e-16 88.2 126 46.8
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 7.4e-16 87.8 60 71.7
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 3.7e-15 85.5 68 64.7
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 1.5e-13 80.1 47 76.6
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 5.5e-11 71.6 131 35.1
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 9.4e-11 70.9 66 54.5
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 1.6e-10 70.1 66 54.5
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 2.3e-09 66.2 66 51.5
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 3.9e-09 65.5 123 35.0
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 1.3e-07 60.5 39 69.2
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 8.2e-07 57.8 117 33.3


User provided reference genes

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