Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00710 Beta vulgaris HOM05D005373 ORTHO05D006617 5.4e-53 210.7 104 100.0
AUR62013793 Chenopodium quinoa HOM05D005373 ORTHO05D006617 6.6e-51 203.8 104 95.2
Sc02g0003290 Simmondsia chinensis HOM05D005373 ORTHO05D006617 1.5e-50 202.6 104 94.2
AUR62023362 Chenopodium quinoa HOM05D005373 ORTHO05D006617 1.9e-50 202.2 104 94.2
QL12p042863 Quercus lobata HOM05D005373 ORTHO05D006617 1.9e-50 202.2 103 93.2
QL04p081438 Quercus lobata HOM05D005373 ORTHO05D006617 5.6e-50 200.7 103 92.2
Atru.chr5.1594 Acer truncatum HOM05D005373 ORTHO05D006617 7.3e-50 200.3 104 92.3
Hund17126 Selenicereus undatus HOM05D005373 ORTHO05D006617 1.3e-49 199.5 104 93.3
Manes.01G200900 Manihot esculenta HOM05D005373 ORTHO05D006617 1.6e-49 199.1 104 91.3
Duzib211G0177 Durio zibethinus HOM05D005373 ORTHO05D006617 3.6e-49 198.0 104 90.4
FvH4_2g22310 Fragaria vesca HOM05D005373 ORTHO05D006617 3.6e-49 198.0 104 90.4
FAN20G0018 Fragaria x ananassa HOM05D005373 ORTHO05D006617 3.6e-49 198.0 104 90.4
FAN24G2777 Fragaria x ananassa HOM05D005373 ORTHO05D006617 3.6e-49 198.0 104 90.4
Dinv22468 Davidia involucrata HOM05D005373 ORTHO05D006617 8.1e-49 196.8 104 90.4
RcHm_v2.0_Chr6g0289311 Rosa chinensis HOM05D005373 ORTHO05D006617 8.1e-49 196.8 104 90.4
Thecc.01G266100 Theobroma cacao HOM05D005373 ORTHO05D006617 1.1e-48 196.4 104 88.5
Cfa002338 Carpinus fangiana HOM05D005373 ORTHO05D006617 1.4e-48 196.1 104 89.4
COL.COLO4_08280 Corchorus olitorius HOM05D005373 ORTHO05D006617 1.4e-48 196.1 104 89.4
COL.COLO4_29457 Corchorus olitorius HOM05D005373 ORTHO05D006617 1.4e-48 196.1 104 89.4
GSVIVG01000751001 Vitis vinifera HOM05D005373 ORTHO05D006617 1.4e-48 196.1 104 90.4
arahy.Tifrunner.gnm1.ann1.W8F73Z Arachis hypogaea HOM05D005373 ORTHO05D006617 1.8e-48 195.7 104 88.5
Ciclev10023009m.g Citrus clementina HOM05D005373 ORTHO05D006617 1.8e-48 195.7 104 89.4
THA.LOC104821383 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 1.8e-48 195.7 104 90.4
CSS0017854 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 2.4e-48 195.3 104 88.5
CARHR157930 Cardamine hirsuta HOM05D005373 ORTHO05D006617 2.4e-48 195.3 104 89.4
Cpa.g.sc52.142 Carica papaya HOM05D005373 ORTHO05D006617 2.4e-48 195.3 104 88.5
Gohir.A08G188600 Gossypium hirsutum HOM05D005373 ORTHO05D006617 2.4e-48 195.3 104 88.5
Gohir.D08G207000 Gossypium hirsutum HOM05D005373 ORTHO05D006617 2.4e-48 195.3 104 88.5
Gorai.004G219200 Gossypium raimondii HOM05D005373 ORTHO05D006617 2.4e-48 195.3 104 88.5
AT3G49100 Arabidopsis thaliana HOM05D005373 ORTHO05D006617 3.1e-48 194.9 104 88.5
Prupe.8G230800 Prunus persica HOM05D005373 ORTHO05D006617 3.1e-48 194.9 104 88.5
Sp5g12980 Schrenkiella parvula HOM05D005373 ORTHO05D006617 3.1e-48 194.9 104 88.5
FAN15G3255 Fragaria x ananassa HOM05D005373 ORTHO05D006617 4.0e-48 194.5 104 89.4
Rhsim12G0063100 Rhododendron simsii HOM05D005373 ORTHO05D006617 4.0e-48 194.5 104 88.5
Sed0003924 Sechium edule HOM05D005373 ORTHO05D006617 4.0e-48 194.5 104 88.5
Actinidia24948 Actinidia chinensis HOM05D005373 ORTHO05D006617 5.3e-48 194.1 104 88.5
AL5G28610 Arabidopsis lyrata HOM05D005373 ORTHO05D006617 5.3e-48 194.1 104 87.5
CiPaw.02G033000 Carya illinoinensis HOM05D005373 ORTHO05D006617 5.3e-48 194.1 104 88.5
CiPaw.04G182700 Carya illinoinensis HOM05D005373 ORTHO05D006617 5.3e-48 194.1 104 88.5
Carub.0005s1529 Capsella rubella HOM05D005373 ORTHO05D006617 6.9e-48 193.7 104 88.5
MD05G1204500 Malus domestica HOM05D005373 ORTHO05D006617 6.9e-48 193.7 104 88.5
MD10G1191500 Malus domestica HOM05D005373 ORTHO05D006617 6.9e-48 193.7 104 88.5
Actinidia21168 Actinidia chinensis HOM05D005373 ORTHO05D006617 9.0e-48 193.4 104 87.5
Medtr1g070460 Medicago truncatula HOM05D005373 ORTHO05D006617 9.0e-48 193.4 104 87.5
Psat4g197520 Pisum sativum HOM05D005373 ORTHO05D006617 9.0e-48 193.4 104 87.5
TPR.G35732 Trifolium pratense HOM05D005373 ORTHO05D006617 9.0e-48 193.4 104 87.5
TAR365G0879 Trochodendron aralioides HOM05D005373 ORTHO05D006617 9.0e-48 193.4 104 88.5
Potri.002G043600 Populus trichocarpa HOM05D005373 ORTHO05D006617 1.2e-47 193.0 104 88.5
THA.LOC104818165 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 1.5e-47 192.6 104 87.5
Aa31LG4G17560 Aethionema arabicum HOM05D005373 ORTHO05D006617 2.0e-47 192.2 105 89.5
Thhalv10010849m.g Eutrema salsugineum HOM05D005373 ORTHO05D006617 2.0e-47 192.2 104 87.5
Lj5g0027817 Lotus japonicus HOM05D005373 ORTHO05D006617 2.0e-47 192.2 104 85.6
Rhsim01G0268500 Rhododendron simsii HOM05D005373 ORTHO05D006617 2.0e-47 192.2 104 86.5
CSS0009352 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 2.6e-47 191.8 104 88.5
Cc01_g18740 Coffea canephora HOM05D005373 ORTHO05D006617 2.6e-47 191.8 104 86.5
MELO3C014306.2 Cucumis melo HOM05D005373 ORTHO05D006617 2.6e-47 191.8 104 87.5
CsaV3_2G013670 Cucumis sativus L. HOM05D005373 ORTHO05D006617 2.6e-47 191.8 104 87.5
Dinv34577 Davidia involucrata HOM05D005373 ORTHO05D006617 2.6e-47 191.8 104 88.5
Phvul.008G134200 Phaseolus vulgaris HOM05D005373 ORTHO05D006617 2.6e-47 191.8 104 84.6
BcaB01g00749 Brassica carinata HOM05D005373 ORTHO05D006617 3.4e-47 191.4 104 86.5
PGR102G1093 Punica granatum HOM05D005373 ORTHO05D006617 3.4e-47 191.4 104 87.5
BcaC07g39386 Brassica carinata HOM05D005373 ORTHO05D006617 4.4e-47 191.0 104 86.5
A06p18650 Brassica napus HOM05D005373 ORTHO05D006617 4.4e-47 191.0 104 86.5
C08p24090 Brassica napus HOM05D005373 ORTHO05D006617 4.4e-47 191.0 104 86.5
BolC8t50030H Brassica oleracea HOM05D005373 ORTHO05D006617 4.4e-47 191.0 104 86.5
BraA06t24943Z Brassica rapa HOM05D005373 ORTHO05D006617 4.4e-47 191.0 104 86.5
Nn1g02594 Nelumbo nucifera HOM05D005373 ORTHO05D006617 4.4e-47 191.0 104 86.5
Glyma.08G346000 Glycine max HOM05D005373 ORTHO05D006617 5.8e-47 190.7 104 83.7
Gorai.007G142700 Gossypium raimondii HOM05D005373 ORTHO05D006617 5.8e-47 190.7 104 89.4
Glyma.18G156300 Glycine max HOM05D005373 ORTHO05D006617 7.6e-47 190.3 104 83.7
TPR.G2468 Trifolium pratense HOM05D005373 ORTHO05D006617 7.6e-47 190.3 104 84.6
Oeu002282.1 Olea europaea HOM05D001069 ORTHO05D001549 9.9e-47 189.9 104 85.6
Potri.005G219400 Populus trichocarpa HOM05D005373 ORTHO05D006617 9.9e-47 189.9 104 85.6
TAR633G1352 Trochodendron aralioides HOM05D005373 ORTHO05D006617 9.9e-47 189.9 104 85.6
ClCG07G000650 Citrullus lanatus HOM05D005373 ORTHO05D006617 1.3e-46 189.5 104 85.6
Lalb_Chr19g0125981 Lupinus albus HOM05D005373 ORTHO05D006617 1.3e-46 189.5 104 83.7
CANSAT01G0877 Cannabis sativa HOM05D005373 ORTHO05D006617 1.7e-46 189.1 104 84.6
DCAR_012520 Daucus carota HOM05D005373 ORTHO05D006617 1.7e-46 189.1 104 88.5
Glyma.10G032800 Glycine max HOM05D005373 ORTHO05D006617 1.7e-46 189.1 104 85.6
BcaB02g09576 Brassica carinata HOM05D005373 ORTHO05D006617 2.2e-46 188.7 104 84.6
PSO832G1599 Papaver somniferum HOM05D005373 ORTHO05D006617 2.9e-46 188.3 104 84.6
BraA06t25747Z Brassica rapa HOM05D005373 ORTHO05D006617 3.8e-46 188.0 104 84.6
Lalb_Chr03g0041301 Lupinus albus HOM05D005373 ORTHO05D006617 3.8e-46 188.0 104 81.7
A06p28050 Brassica napus HOM05D005373 ORTHO05D006617 4.9e-46 187.6 104 84.6
Eucgr.B01502 Eucalyptus grandis HOM05D005373 ORTHO05D006617 4.9e-46 187.6 104 85.6
Glyma.02G141101 Glycine max HOM05D005373 ORTHO05D006617 4.9e-46 187.6 104 85.6
MBI04_g39243_MAGBIO Magnolia biondii HOM05D005373 ORTHO05D006617 4.9e-46 187.6 104 84.6
CANSAT11G1068 Cannabis sativa HOM05D005373 ORTHO05D006617 8.4e-46 186.8 104 83.7
Duzib138G0987 Durio zibethinus HOM05D005373 ORTHO05D006617 8.4e-46 186.8 105 86.7
TWI18G0681 Tripterygium wilfordii HOM05D005373 ORTHO05D006617 8.4e-46 186.8 104 83.7
vmacro11045 Vaccinium macrocarpon HOM05D005373 ORTHO05D006617 8.4e-46 186.8 104 85.6
Aqoxy2G03557 Aquilegia oxysepala HOM05D005373 ORTHO05D006617 1.1e-45 186.4 104 84.6
SGA_v2.0_scaffold1G00570 Striga asiatica HOM05D005373 ORTHO05D006617 1.1e-45 186.4 104 84.6
ATR0665G560 Amborella trichopoda HOM05D005373 ORTHO05D006617 1.4e-45 186.0 104 85.6
Peaxi162Scf00700g00135 Petunia axillaris HOM05D005373 ORTHO05D006617 1.4e-45 186.0 104 86.5
MSTRG.18297 Avicennia marina HOM05D005373 ORTHO05D006617 2.4e-45 185.3 104 82.7
BcaC01g02388 Brassica carinata HOM05D005373 ORTHO05D006617 3.2e-45 184.9 104 83.7
BolC3t18839H Brassica oleracea HOM05D005373 ORTHO05D006617 3.2e-45 184.9 104 83.7
Nn3g19526 Nelumbo nucifera HOM05D005373 ORTHO05D006617 4.2e-45 184.5 110 81.8
Migut.D00388 Erythranthe guttata HOM05D005373 ORTHO05D006617 9.3e-45 183.3 104 83.7
Solyc12g099820.1 Solanum lycopersicum HOM05D005373 ORTHO05D006617 9.3e-45 183.3 104 84.6
Sopen12g034450 Solanum pennellii HOM05D005373 ORTHO05D006617 9.3e-45 183.3 104 84.6
arahy.Tifrunner.gnm1.ann1.ZBI3RA Arachis hypogaea HOM05D005373 ORTHO05D006617 1.6e-44 182.6 130 71.5
C03p65820 Brassica napus HOM05D005373 ORTHO05D006617 1.6e-44 182.6 104 82.7
Zm00001eb281280 Zea mays HOM05D005373 ORTHO05D006617 1.6e-44 182.6 103 82.5
CAN.G575.93 Capsicum annuum HOM05D005373 ORTHO05D006617 2.7e-44 181.8 104 85.6
SGA_v2.0_scaffold138G35268 Striga asiatica HOM05D005373 ORTHO05D006617 2.7e-44 181.8 104 81.7
Haze_24544 Corylus avellana HOM05D005373 ORTHO05D006617 7.9e-44 180.3 130 70.8
SalBow4G0280 Salvia bowleyana HOM05D005373 ORTHO05D006617 1.0e-43 179.9 104 79.8
PGSC0003DMG400004717 Solanum tuberosum HOM05D005373 ORTHO05D006617 1.0e-43 179.9 106 84.0
Nitab4.5_0002310g0090 Nicotiana tabacum HOM05D005373 ORTHO05D006617 1.3e-43 179.5 104 82.7
unitig_26.g10142 Utricularia gibba HOM05D005373 ORTHO05D006617 1.3e-43 179.5 104 80.8
HanXRQChr01g0005311 Helianthus annuus HOM05D005373 ORTHO05D006617 3.0e-43 178.3 104 85.6
HanXRQChr06g0164391 Helianthus annuus HOM05D005373 ORTHO05D006617 3.0e-43 178.3 104 85.6
HPP92_008005 Vanilla planifolia HOM05D005373 ORTHO05D006617 3.0e-43 178.3 104 79.8
MSTRG.21508 Avicennia marina HOM05D005373 ORTHO05D006617 3.9e-43 177.9 104 82.7
PSO063G5966 Papaver somniferum HOM05D005373 ORTHO05D006617 5.1e-43 177.6 104 82.7
Lsat_1_v5_gn_5_186641 Lactuca sativa HOM05D005373 ORTHO05D006617 8.7e-43 176.8 104 84.6
Zm00001eb379840 Zea mays HOM05D005373 ORTHO05D006617 1.1e-42 176.4 104 80.8
Ah.05g177620 Amaranthus hybridus HOM05D005373 ORTHO05D006617 7.3e-42 173.7 167 58.7
ECA248G2609 Erigeron canadensis HOM05D005373 ORTHO05D006617 9.6e-42 173.3 104 82.7
Migut.N02186 Erythranthe guttata HOM05D005373 ORTHO05D006617 1.3e-41 172.9 104 77.9
AagrBONN_evm.TU.Sc2ySwM_344.4653 Anthoceros agrestis HOM05D005373 ORTHO05D006617 1.7e-38 162.5 104 73.1
Hma1.2p1_1029F.1_g249680 Hydrangea macrophylla HOM05D005373 ORTHO05D006617 7.1e-37 157.1 78 93.6
Mapoly0042s0050 Marchantia polymorpha HOM05D005373 ORTHO05D006617 1.3e-35 152.9 104 67.3
Pp3c14_7880 Physcomitrium patens HOM05D005373 ORTHO05D006617 1.3e-35 152.9 104 69.2
Pp3c2_1790 Physcomitrium patens HOM05D005373 ORTHO05D006617 1.5e-34 149.4 104 66.3
CSS0047138 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 1.9e-34 149.1 104 75.0
CDE06G2230 Ceratophyllum demersum HOM05D005373 ORTHO05D006617 4.3e-34 147.9 88 80.7
Sabra02G0035300 Salix brachista HOM05D005373 ORTHO05D006617 1.5e-31 139.4 91 76.9
Gohir.D11G133500 Gossypium hirsutum HOM05D005373 ORTHO05D006617 5.8e-31 137.5 76 89.5
Gohir.A11G127860 Gossypium hirsutum HOM05D005373 ORTHO05D006617 8.4e-30 133.7 76 88.2
CBR_g18652 Chara braunii HOM05D005373 ORTHO05D006617 7.4e-26 120.6 105 58.1
Atru.chr7.944 Acer truncatum HOM05D005373 ORTHO05D006617 9.0e-24 113.6 57 91.2
Sed0007692 Sechium edule HOM05D005373 ORTHO05D006617 1.3e-22 109.8 79 70.9
Atru.chr2.3918 Acer truncatum HOM05D005373 ORTHO05D006617 1.1e-21 106.7 68 82.4
Gohir.A12G149900 Gossypium hirsutum HOM05D005373 ORTHO05D006617 1.2e-20 103.2 57 86.0
TWI36G0734 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 3.7e-17 91.7 56 80.4
CSS0032008 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 1.1e-16 90.1 53 83.0
Gohir.A10G156200 Gossypium hirsutum HOM05D005373 ORTHO05D006617 1.4e-16 89.7 55 81.8
PRCOL_00002130 Prasinoderma coloniale HOM05D005373 ORTHO05D006617 2.4e-16 89.0 84 48.8
Cre12.g546250 Chlamydomonas reinhardtii HOM05D005373 ORTHO05D006617 3.1e-16 88.6 75 52.0
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 1.7e-14 82.8 53 81.1


User provided reference genes

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