Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 3.0e-269 931.8 670 100.0
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 1.0e-213 747.3 678 76.0
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 8.0e-206 721.1 674 83.1
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 1.3e-200 703.7 678 82.4
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 1.1e-199 700.7 620 85.3
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 1.8e-197 693.3 678 79.4
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 6.8e-197 691.4 678 80.8
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 1.6e-193 680.2 678 78.5
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.1e-191 674.1 677 78.7
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 7.5e-188 661.4 678 77.6
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 2.2e-187 659.8 677 76.7
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 2.8e-187 659.4 681 76.7
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 4.1e-186 655.6 678 78.8
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 7.0e-186 654.8 467 75.4
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 5.9e-185 651.7 679 76.7
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 1.3e-184 650.6 680 76.6
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 1.1e-183 647.5 467 74.7
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 1.5e-183 647.1 678 76.3
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 1.9e-183 646.7 674 76.0
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 1.9e-183 646.7 679 76.4
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 1.9e-183 646.7 467 72.4
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 2.5e-183 646.4 677 76.1
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 5.6e-183 645.2 467 74.3
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 7.2e-183 644.8 675 75.9
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 1.6e-182 643.7 680 76.2
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 1.6e-182 643.7 677 75.8
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 2.8e-182 642.9 467 71.9
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 3.6e-182 642.5 678 77.0
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 8.0e-182 641.3 678 76.0
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 1.4e-181 640.6 466 73.6
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 2.3e-181 639.8 680 75.0
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 4.0e-181 639.0 467 71.5
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 6.8e-181 638.3 467 71.3
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 8.9e-181 637.9 678 75.2
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 1.5e-180 637.1 466 74.7
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 1.5e-180 637.1 680 75.1
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 3.4e-180 636.0 469 72.1
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 4.4e-180 635.6 673 76.4
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 4.4e-180 635.6 677 75.0
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 9.8e-180 634.4 678 74.8
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 1.3e-179 634.0 469 71.6
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 3.7e-179 632.5 678 76.8
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 4.9e-179 632.1 471 69.2
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 4.9e-179 632.1 467 71.5
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 8.3e-179 631.3 467 71.7
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 1.4e-178 630.6 677 74.9
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 1.8e-178 630.2 680 75.0
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 2.4e-178 629.8 587 62.0
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 1.6e-177 627.1 680 74.9
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 1.6e-177 627.1 680 74.4
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 4.6e-177 625.5 692 73.3
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 5.9e-177 625.2 693 73.2
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 1.0e-176 624.4 467 70.4
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 1.7e-176 623.6 680 75.4
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 8.6e-176 621.3 467 69.6
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 8.6e-176 621.3 678 74.6
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 3.3e-175 619.4 467 69.4
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 5.6e-175 618.6 681 73.6
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 1.2e-174 617.5 679 74.4
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 6.2e-174 615.1 472 68.9
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 2.3e-173 613.2 685 74.2
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 4.1e-170 602.4 718 70.5
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 1.3e-168 597.4 678 72.7
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 3.9e-168 595.9 443 71.3
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 7.3e-167 591.7 677 72.1
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 1.2e-166 590.9 672 73.4
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.4e-165 587.4 673 73.1
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.8e-165 587.0 462 68.6
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 3.1e-165 586.3 673 73.0
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 4.0e-165 585.9 677 71.6
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 5.2e-165 585.5 610 79.5
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 9.8e-164 581.3 677 71.8
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 1.7e-163 580.5 679 72.0
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 2.2e-163 580.1 677 71.6
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 2.2e-163 580.1 467 66.4
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 2.9e-163 579.7 677 71.6
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 1.0e-160 571.2 677 71.3
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 1.0e-160 571.2 677 71.3
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.5e-159 566.6 668 63.0
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 7.3e-159 565.1 681 70.9
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 9.5e-159 564.7 466 65.7
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 4.7e-158 562.4 680 69.7
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 1.1e-157 561.2 468 63.9
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 1.1e-157 561.2 467 64.2
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 4.0e-157 559.3 677 70.8
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 4.0e-157 559.3 468 62.4
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 1.2e-156 557.8 677 70.8
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 1.5e-156 557.4 467 64.0
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 9.9e-156 554.7 679 70.5
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 9.9e-156 554.7 466 63.7
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 9.2e-154 548.1 680 68.8
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 2.1e-153 547.0 572 80.1
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 2.3e-152 543.5 359 77.2
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 1.5e-151 540.8 462 63.0
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 6.2e-150 535.4 524 58.8
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 1.4e-149 534.3 467 61.9
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 1.8e-149 533.9 680 68.1
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 4.0e-149 532.7 680 67.9
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 4.4e-148 529.3 467 63.4
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 2.5e-143 513.5 394 69.8
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 4.3e-143 512.7 566 79.2
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 3.1e-141 506.5 449 63.0
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 6.4e-139 498.8 464 58.0
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 8.7e-136 488.4 359 68.5
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 1.1e-127 461.5 680 64.1
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 1.9e-122 444.1 715 61.7
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 7.9e-121 438.7 684 61.5
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 1.8e-120 437.6 471 52.4
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 3.7e-118 429.9 414 58.7
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 6.3e-118 429.1 356 66.0
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 5.3e-109 399.4 293 74.1
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 3.2e-106 390.2 279 72.8
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 1.6e-105 387.9 395 52.7
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 2.1e-105 387.5 325 64.9
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.2e-89 335.1 676 59.0
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 1.9e-66 258.1 194 69.6
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 2.2e-62 244.6 476 34.7
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 1.0e-56 225.7 233 57.1
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 1.4e-56 225.3 141 80.9
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 3.2e-53 214.2 566 45.6
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.7e-52 211.1 204 54.4
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 2.7e-52 211.1 180 65.6
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 3.5e-52 210.7 278 50.0
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 7.8e-52 209.5 486 30.9
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 1.2e-49 202.2 200 50.0
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 4.0e-48 197.2 539 28.6
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.5e-47 195.3 143 67.8
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 1.4e-45 188.7 295 45.8
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.1e-41 174.9 162 61.1
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 8.9e-40 169.5 130 62.3
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 9.2e-37 159.5 143 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 9.2e-37 159.5 154 54.5
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 3.3e-34 151.0 292 37.3
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 1.3e-30 139.0 101 67.3
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 5.4e-29 133.7 294 82.7
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.0e-23 115.2 66 81.8
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 3.5e-20 104.4 93 64.5
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 1.1e-18 99.4 525 22.1
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 1.1e-18 99.4 119 48.7
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 1.9e-18 98.6 290 35.9
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 9.6e-18 96.3 67 65.7
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 1.3e-14 85.9 511 23.9
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 6.4e-14 83.6 71 56.3
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.3e-09 69.3 50 72.0
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 2.8e-09 68.2 53 67.9
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 6.2e-09 67.0 186 30.6
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 4.0e-08 64.3 47 66.0
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 6.9e-08 63.5 52 61.5
Actinidia36729 Actinidia chinensis HOM05D004632 ORTHO05D005556 8.4e-06 56.6 135 32.6


User provided reference genes

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