Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 3918.2 2033 100.0
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 2771.5 2014 72.6
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 2689.8 2013 71.0
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 2520.0 2033 67.8
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 2339.3 2154 60.9
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2162.1 2074 58.2
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2045.8 2059 56.9
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2005.7 2080 55.4
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 1997.2 2062 55.4
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 1978.8 2067 55.0
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1969.1 2072 54.8
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 1964.1 2061 55.4
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 1960.7 2051 55.0
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 1940.2 2054 54.6
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 1938.3 2061 54.1
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1934.8 2046 54.3
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 1932.1 2048 54.4
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1927.1 2041 54.3
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 1923.7 2206 52.3
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 1922.9 2087 54.2
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 1902.5 2058 53.3
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 1899.8 2075 53.6
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 1889.8 2061 53.0
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1886.3 2077 53.2
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1884.8 2083 53.1
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 1882.8 2082 53.1
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1855.9 2018 52.8
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1853.6 1613 60.6
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1851.6 2088 52.2
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1850.1 2069 52.6
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1849.7 2047 53.1
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1849.7 2094 52.3
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1848.6 2090 52.2
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1848.6 1673 59.3
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1819.3 1608 59.6
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1819.3 2061 52.3
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1818.9 2027 52.2
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1814.3 2036 52.3
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1812.7 2016 52.1
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1808.1 2049 51.4
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1805.4 2034 51.8
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1799.3 1733 56.7
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1796.2 2048 51.6
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1793.9 2037 51.9
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1793.1 2050 51.3
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1770.7 2025 51.7
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1768.4 2038 50.9
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1765.7 2091 50.9
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1765.7 2047 51.1
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1762.3 2054 49.8
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1761.9 2064 50.1
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1754.2 2058 50.9
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1752.6 2043 50.9
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1736.1 2092 49.8
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1728.8 1998 51.4
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1727.2 2170 49.9
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1724.9 2082 49.4
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1699.1 1536 59.0
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1689.5 2081 48.9
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1680.2 2107 48.4
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1679.8 2077 48.9
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1678.3 2093 48.3
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1677.9 2081 48.7
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1667.5 1956 50.6
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1667.1 2069 48.8
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1663.3 2072 48.7
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1659.4 2060 48.3
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1658.3 1695 53.5
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1657.1 1957 50.2
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1655.2 2044 49.0
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1642.1 2034 48.9
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1640.6 1956 49.8
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1639.8 1742 52.8
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1630.5 2023 48.8
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1628.2 2046 48.0
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1627.8 1769 53.9
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1616.3 2062 47.7
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1606.7 2073 47.6
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1604.3 2196 45.3
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1596.6 1400 60.4
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1585.5 2033 46.7
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1576.6 2038 46.9
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1575.1 1963 46.8
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1572.8 1974 46.7
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1560.0 2081 45.8
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1558.5 2071 45.9
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1558.5 2045 46.2
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1552.7 2060 46.6
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1547.7 1911 49.4
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1547.7 1911 49.4
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1546.2 2045 47.6
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1546.2 2062 46.2
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1543.1 1979 46.4
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1490.3 1847 48.5
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1484.9 1542 52.7
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1460.3 1296 59.6
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1452.6 1966 45.1
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1449.9 2045 44.3
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1433.7 2070 43.7
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1340.1 1135 63.9
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 6.8e-293 1011.9 1688 37.8
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 2.9e-291 1006.5 1765 37.4
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.2e-275 953.7 1745 36.8
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 1.8e-272 944.1 1156 50.9
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 1.1e-271 941.4 2036 35.4
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 1.1e-269 934.9 2111 33.0
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 5.3e-269 932.6 1019 51.4
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 3.2e-266 923.3 1973 35.0
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 7.9e-249 865.5 1176 46.0
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 2.8e-246 857.1 954 50.5
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 1.2e-225 788.5 1132 46.0
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.5e-220 770.0 1031 46.2
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.9e-218 764.6 1135 44.3
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 4.7e-217 760.0 1022 48.2
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.8e-201 707.6 1517 32.8
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 4.1e-197 693.7 1829 30.0
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 3.8e-174 617.5 1170 36.8
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.5e-162 578.9 636 51.1
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 7.9e-156 556.6 603 51.7
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 1.4e-144 519.2 463 58.1
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 2.1e-132 478.8 840 41.0
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.9e-131 474.6 727 40.6
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.2e-124 453.0 607 45.1
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 5.5e-117 427.6 625 41.9
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.1e-112 411.4 628 39.6
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 5.7e-106 391.0 761 41.3
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 2.6e-82 312.4 293 58.4
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 2.3e-62 246.1 493 34.5
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 6.6e-62 244.6 382 40.6
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.5e-53 216.9 284 41.2
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 2.9e-49 202.6 381 36.7
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 3.2e-40 172.6 291 37.5
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 7.1e-40 171.4 170 52.9
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 2.1e-39 169.9 295 40.7
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 9.6e-37 161.0 139 57.6
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.9e-33 149.4 219 39.7
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 3.8e-33 149.1 436 34.6
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 2.3e-30 139.8 746 27.9
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 2.2e-28 133.3 771 20.9
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 6.3e-28 131.7 81 72.8
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 8.5e-25 121.3 125 54.4
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 8.8e-22 111.3 223 36.3
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 1.1e-21 110.9 342 26.9
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 5.7e-21 108.6 227 34.4
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 2.2e-20 106.7 230 34.8
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 3.7e-20 105.9 85 64.7
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 4.8e-20 105.5 120 53.3
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 4.1e-19 102.4 109 54.1
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 9.1e-19 101.3 377 27.6
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 5.0e-17 95.5 226 30.5
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 1.1e-16 94.4 147 42.9
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.4e-14 87.4 102 52.0
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 3.3e-13 82.8 56 66.1
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 7.4e-13 81.6 68 61.8
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 1.1e-11 77.8 155 35.5
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 1.4e-11 77.4 104 40.4
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 5.3e-11 75.5 71 53.5
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 5.3e-11 75.5 139 34.5
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 2.0e-10 73.6 56 66.1
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 1.4e-08 67.4 95 42.1
Psat1g112240 Pisum sativum HOM05D004392 ORTHO05D029174 2.3e-06 60.1 54 57.4


User provided reference genes

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