Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 4.4e-225 784.3 387 100.0
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 1.6e-121 440.3 345 64.9
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 5.8e-116 421.8 303 69.0
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 1.4e-109 400.6 362 60.5
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 4.1e-106 389.0 364 56.6
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 5.1e-104 382.1 347 60.5
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 1.1e-103 380.9 334 59.6
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 1.5e-103 380.6 376 54.3
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 1.5e-103 380.6 352 55.7
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 1.5e-103 380.6 346 56.1
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 2.8e-102 376.3 343 56.0
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 3.6e-102 375.9 352 54.0
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 6.2e-102 375.2 343 58.0
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 6.2e-102 375.2 343 55.4
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 6.8e-101 371.7 372 54.0
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 1.2e-100 370.9 356 55.1
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.2e-100 370.9 371 54.2
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 2.0e-100 370.2 367 53.7
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 1.3e-99 367.5 365 52.9
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.7e-99 367.1 342 55.8
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 1.7e-99 367.1 344 55.8
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 4.9e-99 365.5 378 52.4
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 6.4e-99 365.2 347 54.5
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.4e-98 364.0 361 53.5
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.4e-98 363.2 351 53.8
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 3.2e-98 362.8 377 53.3
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 4.2e-98 362.5 345 56.2
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 4.2e-98 362.5 342 56.1
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 9.2e-98 361.3 345 55.1
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 1.2e-97 360.9 376 51.3
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.2e-97 360.9 352 53.4
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.6e-97 360.5 352 53.1
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 2.1e-97 360.1 335 54.3
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 2.7e-97 359.8 345 55.1
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 3.5e-97 359.4 343 54.8
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 3.5e-97 359.4 333 54.4
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 4.6e-97 359.0 369 52.0
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 4.6e-97 359.0 347 52.7
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 1.0e-96 357.8 344 54.7
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 1.0e-96 357.8 387 49.1
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.3e-96 357.5 343 54.8
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 1.7e-96 357.1 365 52.6
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 2.3e-96 356.7 365 52.3
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.3e-96 356.7 366 51.9
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 3.0e-96 356.3 345 55.1
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 3.9e-96 355.9 343 54.5
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 6.6e-96 355.1 340 55.9
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 8.7e-96 354.8 335 53.4
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 8.7e-96 354.8 349 53.6
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 8.7e-96 354.8 372 51.3
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.1e-95 354.4 343 55.1
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 1.1e-95 354.4 366 51.6
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 1.5e-95 354.0 387 49.1
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 1.9e-95 353.6 364 51.9
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 2.5e-95 353.2 334 54.8
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 2.5e-95 353.2 341 54.0
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 4.3e-95 352.4 341 54.5
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 5.6e-95 352.1 334 54.5
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 7.3e-95 351.7 345 53.9
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 7.3e-95 351.7 342 53.5
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 1.2e-94 350.9 340 55.6
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 1.2e-94 350.9 333 53.8
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 4.7e-94 349.0 344 53.8
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 4.7e-94 349.0 346 54.6
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 6.2e-94 348.6 371 50.4
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 6.2e-94 348.6 335 54.9
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 1.1e-93 347.8 347 53.6
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 2.4e-93 346.7 340 55.0
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 3.1e-93 346.3 344 52.9
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 9.0e-93 344.7 340 54.7
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 2.0e-92 343.6 340 54.7
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 2.6e-92 343.2 370 50.3
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 4.4e-92 342.4 334 53.0
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 7.6e-92 341.7 375 50.9
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 1.3e-91 340.9 255 65.1
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 2.2e-91 340.1 264 61.7
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 2.2e-91 340.1 264 61.7
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 2.4e-90 336.7 252 63.5
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 3.2e-90 336.3 245 64.9
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 7.1e-90 335.1 376 48.7
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 7.1e-90 335.1 367 48.8
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 2.1e-89 333.6 365 49.9
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 2.7e-89 333.2 257 64.2
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 3.5e-89 332.8 345 50.7
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 4.6e-89 332.4 351 51.9
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 4.6e-89 332.4 379 48.0
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 6.0e-89 332.0 343 52.5
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 1.3e-88 330.9 346 51.2
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 1.7e-88 330.5 380 49.2
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 2.3e-88 330.1 341 51.3
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.1e-87 327.8 345 50.7
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.9e-87 327.0 374 47.9
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 2.5e-87 326.6 252 61.5
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.5e-87 326.6 340 51.5
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 3.3e-87 326.2 354 49.7
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 3.3e-87 326.2 337 51.3
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 4.3e-87 325.9 340 51.2
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 3.6e-86 322.8 351 49.6
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 3.6e-86 322.8 365 49.0
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 8.1e-86 321.6 333 52.6
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 3.1e-85 319.7 253 62.5
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 3.1e-85 319.7 244 63.5
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 9.0e-85 318.2 340 51.5
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 1.2e-84 317.8 253 60.1
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 5.8e-84 315.5 337 50.4
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 5.8e-84 315.5 349 48.7
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 2.9e-83 313.2 411 44.0
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 3.2e-82 309.7 367 46.6
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 4.2e-82 309.3 334 48.2
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 4.6e-81 305.8 385 44.4
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 7.9e-81 305.1 260 56.9
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 5.1e-80 302.4 339 47.8
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 2.1e-78 297.0 333 46.2
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 6.2e-78 295.4 332 46.7
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 5.8e-76 288.9 253 58.1
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.3e-71 272.7 343 46.1
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 1.3e-70 271.2 320 47.5
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 2.4e-69 266.9 340 44.4
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 4.5e-68 262.7 319 44.5
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 7.1e-66 255.4 203 63.5
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 7.9e-65 251.9 335 42.4
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 5.1e-64 249.2 194 62.4
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 5.1e-56 222.6 293 44.7
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 9.7e-55 218.4 219 53.9
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 1.2e-52 211.5 352 40.6
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 1.5e-52 211.1 299 38.5
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 1.9e-50 204.1 257 43.6
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 2.5e-50 203.8 143 67.1
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 2.5e-50 203.8 211 50.2
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 4.8e-46 189.5 203 48.8
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 6.3e-46 189.1 214 51.4
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 3.5e-44 183.3 181 52.5
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 9.7e-39 165.2 295 35.3
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 2.8e-38 163.7 271 36.9
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 9.1e-37 158.7 218 43.6
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 1.6e-36 157.9 218 43.6
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 2.5e-34 150.6 101 64.4
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 8.8e-32 142.1 299 31.4
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 2.4e-29 134.0 179 40.2
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 6.1e-25 119.4 163 44.2
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 2.6e-23 114.0 250 34.0
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 1.8e-21 107.8 124 48.4
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.6e-17 94.7 90 55.6
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.6e-17 94.7 90 55.6
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 2.8e-17 94.0 127 40.2
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 6.1e-17 92.8 178 31.5
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 4.9e-14 83.2 144 37.5
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 8.6e-11 72.4 112 42.9
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 5.6e-10 69.7 76 50.0
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 2.2e-06 57.8 30 80.0
CSS0043726 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 4.9e-06 56.6 27 85.2


User provided reference genes

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