Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1260.7 635 100.0
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1167.5 635 91.5
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1124.0 635 88.2
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1102.8 628 86.6
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1100.1 628 86.6
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1097.4 628 85.7
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1094.0 628 85.4
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1093.6 628 86.0
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1092.8 628 86.0
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1092.0 628 86.0
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1090.9 628 85.5
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1090.1 628 85.4
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1089.7 628 85.8
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1089.7 628 85.5
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1087.8 628 85.0
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1086.2 628 85.0
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1085.9 628 84.7
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1085.9 628 85.2
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1084.7 628 84.7
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1084.7 628 84.7
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1084.3 628 85.4
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1084.3 628 85.0
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1082.8 628 84.6
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1082.8 628 84.9
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1082.8 627 84.8
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1080.9 628 84.7
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1080.9 628 84.9
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1080.1 628 84.6
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1079.7 622 85.7
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1079.3 628 84.6
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1078.9 628 84.6
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1077.8 635 83.9
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1077.8 628 83.9
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1076.6 628 84.2
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1076.6 628 84.6
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1076.2 628 84.4
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1075.8 628 84.1
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1075.8 628 84.2
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1075.5 628 84.2
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1075.1 628 83.9
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 4.3e-312 1073.9 622 84.6
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 4.3e-312 1073.5 628 83.8
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 8.7e-312 1072.8 628 84.4
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 1.3e-311 1072.4 628 83.8
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 1.3e-311 1072.4 628 83.9
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 2.2e-311 1071.6 622 84.1
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.0e-311 1071.2 628 84.1
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 6.5e-311 1070.1 628 83.6
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 6.5e-311 1070.1 628 83.4
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 8.7e-311 1069.7 635 83.0
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 8.7e-311 1069.7 628 83.8
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 8.7e-311 1069.7 628 83.6
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 1.1e-310 1069.3 628 83.9
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 1.1e-310 1069.3 628 82.8
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 1.5e-310 1068.9 628 83.9
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 1.9e-310 1068.5 628 83.9
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 1.9e-310 1068.5 628 83.8
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 2.5e-310 1068.1 623 84.1
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 3.3e-310 1067.8 628 82.8
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 7.3e-310 1066.6 638 82.8
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 9.6e-310 1066.2 628 83.8
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 9.6e-310 1066.2 628 83.9
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 9.6e-310 1066.2 628 82.8
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 1.2e-309 1065.8 628 84.4
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 1.6e-309 1065.4 628 83.1
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 1.6e-309 1065.4 628 83.9
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 4.7e-309 1063.9 623 83.9
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 6.2e-309 1063.5 635 81.6
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 8.1e-309 1063.1 628 83.6
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 1.1e-308 1062.8 628 82.3
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 2.4e-308 1061.6 627 82.5
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 2.4e-308 1061.6 628 82.5
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 2.4e-308 1061.6 628 82.8
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 4.0e-308 1060.8 628 82.0
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 2.0e-307 1058.5 635 80.9
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 4.4e-307 1057.4 628 83.3
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 9.9e-307 1056.2 635 81.3
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 9.9e-307 1056.2 628 81.7
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 3.8e-306 1054.3 628 81.8
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 4.9e-306 1053.9 628 81.4
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 1.1e-305 1052.7 635 81.4
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 1.1e-305 1052.7 628 81.5
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 1.4e-305 1052.4 628 81.5
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 3.2e-305 1051.2 655 80.0
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 4.2e-305 1050.8 628 81.5
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 4.2e-305 1050.8 628 81.5
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 4.2e-305 1050.8 628 81.5
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 5.4e-305 1050.4 628 81.4
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 7.1e-305 1050.0 628 81.2
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 1.6e-304 1048.9 628 82.8
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 1.0e-303 1046.2 628 82.6
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 1.3e-303 1045.8 635 80.5
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 1.3e-303 1045.8 628 81.8
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 2.3e-303 1045.0 628 81.5
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 2.5e-302 1041.6 628 80.9
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 1.3e-301 1039.3 628 80.6
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 4.8e-301 1037.3 623 82.2
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 4.0e-300 1034.2 628 80.9
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 2.6e-299 1031.6 628 80.7
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 1.1e-294 1016.1 635 78.9
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 2.7e-288 995.0 582 83.7
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 7.9e-288 993.4 638 78.2
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 3.3e-286 988.0 628 77.5
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 1.1e-281 973.0 626 76.7
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.3e-269 932.9 534 86.1
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 9.4e-265 916.8 639 72.1
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 4.6e-264 914.4 534 84.1
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 5.9e-259 897.5 532 82.7
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 8.8e-255 883.6 629 70.9
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 1.4e-252 876.3 628 71.8
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 1.1e-249 866.7 655 67.9
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 3.3e-246 855.1 490 86.5
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 2.0e-227 792.7 628 64.6
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 2.0e-227 792.7 503 77.9
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 4.5e-227 791.6 628 67.5
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.9e-226 788.9 641 62.4
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 8.6e-226 787.3 503 78.1
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 2.9e-221 772.3 628 65.3
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 6.4e-221 771.2 492 78.5
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 1.6e-192 676.8 444 76.1
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 9.9e-182 641.0 640 53.1
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 5.6e-177 625.2 535 64.5
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.1e-167 594.3 446 70.0
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.2e-166 590.9 354 83.1
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 9.1e-151 538.1 402 70.6
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 1.3e-141 507.7 306 81.0
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 2.2e-133 480.3 287 82.6
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 2.5e-124 450.3 269 81.8
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 4.7e-115 419.5 517 43.9
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 1.5e-84 318.2 192 80.7
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.0e-77 295.4 172 84.3
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 3.0e-77 293.9 231 66.2
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 2.0e-73 281.2 160 85.6
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 7.6e-73 279.3 231 62.8
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 3.2e-71 273.9 163 82.8
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.4e-63 247.7 628 30.9
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 2.1e-54 218.0 273 46.5
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 1.1e-42 179.1 225 48.4
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 8.5e-40 169.5 96 86.5
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.4e-37 162.2 96 80.2
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 4.3e-36 157.1 99 76.8
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.3e-35 155.6 86 82.6
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 1.7e-35 155.2 152 57.2
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 6.3e-35 153.3 103 70.9
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 2.2e-32 144.8 91 79.1
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 3.8e-32 144.1 91 78.0
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 4.2e-31 140.6 90 80.0
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 2.1e-30 138.3 74 83.8
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 1.1e-28 132.5 142 52.1
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 8.2e-19 99.8 60 80.0
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 2.4e-18 98.2 53 84.9
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 2.4e-18 98.2 114 51.8
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 5.0e-16 90.5 63 66.7
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 8.5e-16 89.7 55 76.4
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 6.1e-14 83.6 65 61.5
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 2.0e-12 78.6 46 80.4
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 2.8e-11 74.7 56 60.7
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 1.1e-10 72.8 43 79.1


User provided reference genes

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