Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 6.4e-235 817.0 401 100.0
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 3.6e-177 625.2 398 74.9
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 2.5e-170 602.4 397 72.3
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 4.8e-166 588.2 402 71.1
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 2.9e-163 578.9 401 70.6
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 2.6e-159 565.8 307 83.4
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 2.4e-157 559.3 394 66.0
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 2.0e-156 556.2 394 67.0
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 2.0e-156 556.2 429 61.8
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 1.7e-155 553.1 394 67.0
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 1.1e-154 550.4 394 66.8
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 2.5e-154 549.3 394 66.5
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 1.6e-153 546.6 394 65.5
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 2.1e-153 546.2 394 66.0
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 2.1e-153 546.2 394 65.2
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 4.7e-153 545.0 394 66.5
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 8.0e-153 544.3 393 66.9
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 8.0e-153 544.3 394 65.2
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 1.2e-151 540.4 421 61.3
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 1.2e-151 540.4 394 65.7
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 1.5e-151 540.0 394 64.5
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 1.5e-151 540.0 394 64.7
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 1.5e-151 540.0 394 65.5
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 5.7e-151 538.1 394 64.0
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 7.5e-151 537.7 394 65.0
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 7.5e-151 537.7 394 65.2
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 1.3e-150 537.0 394 63.7
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 3.7e-150 535.4 394 65.2
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 3.7e-150 535.4 394 63.2
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 4.8e-150 535.0 393 64.4
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 6.3e-150 534.6 394 64.0
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 8.3e-150 534.3 394 62.7
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 4.1e-149 531.9 394 62.7
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 5.4e-149 531.6 394 63.5
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 1.6e-148 530.0 394 63.5
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 2.0e-148 529.6 394 63.5
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 2.0e-148 529.6 394 62.4
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 4.5e-148 528.5 393 62.8
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 4.5e-148 528.5 393 62.8
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 7.7e-148 527.7 394 62.2
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.3e-147 526.9 405 61.7
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 1.3e-147 526.9 394 62.4
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 1.7e-147 526.6 396 64.1
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 6.5e-147 524.6 424 60.8
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 8.5e-147 524.2 397 61.7
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 1.1e-146 523.9 393 63.9
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 1.1e-146 523.9 421 59.6
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 5.5e-146 521.5 393 61.6
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 1.6e-145 520.0 394 61.4
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 4.7e-145 518.5 394 61.4
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 1.0e-144 517.3 396 62.4
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 3.0e-144 515.8 413 60.8
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 4.0e-144 515.4 410 61.2
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 4.0e-144 515.4 396 61.9
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 6.8e-144 514.6 393 62.6
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 8.8e-144 514.2 391 62.1
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 2.6e-143 512.7 393 62.1
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 3.4e-143 512.3 395 62.3
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 3.4e-143 512.3 397 60.2
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 7.5e-143 511.1 395 63.0
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 9.8e-143 510.8 396 62.9
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 1.7e-142 510.0 394 60.2
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 2.2e-142 509.6 394 61.2
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 2.8e-142 509.2 394 60.2
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 2.8e-142 509.2 394 59.9
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 3.7e-142 508.8 417 59.2
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 4.9e-142 508.4 413 59.3
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 6.3e-142 508.1 397 61.5
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 1.4e-141 506.9 413 58.8
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 2.4e-141 506.1 428 58.2
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 9.2e-141 504.2 394 61.7
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 1.6e-140 503.4 430 58.4
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 3.5e-140 502.3 304 76.3
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 5.9e-140 501.5 429 57.8
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 5.9e-140 501.5 430 57.9
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 5.9e-140 501.5 395 59.5
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 7.7e-140 501.1 398 60.6
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 7.7e-140 501.1 430 57.9
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 7.7e-140 501.1 430 57.9
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 1.7e-139 500.0 394 60.7
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.9e-139 499.2 396 58.3
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 5.0e-139 498.4 398 59.3
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 6.6e-139 498.0 398 60.6
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.6e-139 498.0 394 60.9
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 2.5e-138 496.1 397 60.7
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 3.3e-138 495.7 406 58.1
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 3.3e-138 495.7 393 61.6
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 4.3e-138 495.4 397 60.5
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 3.6e-137 492.3 393 61.1
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 6.1e-137 491.5 413 58.4
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 8.0e-137 491.1 396 62.6
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 4.0e-136 488.8 306 72.9
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 9.8e-135 484.2 385 58.4
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.8e-133 479.9 409 59.2
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.6e-131 471.5 403 55.3
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 2.5e-130 469.5 383 59.8
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 2.5e-130 469.5 307 69.7
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 3.2e-125 452.6 306 67.0
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 7.0e-125 451.4 364 62.1
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 3.5e-124 449.1 397 54.9
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 5.0e-123 445.3 394 55.3
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 3.5e-116 422.5 396 55.6
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 6.2e-113 411.8 305 65.6
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 6.6e-107 391.7 306 61.4
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 6.6e-107 391.7 306 62.1
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 1.5e-103 380.6 322 58.1
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 3.3e-98 362.8 405 45.2
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 3.3e-98 362.8 400 44.8
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 3.1e-96 356.3 409 44.7
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 1.3e-91 340.9 304 52.0
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.8e-88 330.5 242 62.0
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 3.8e-86 322.8 431 40.6
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 4.8e-81 305.8 249 62.7
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 4.0e-80 302.8 248 61.3
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 6.9e-72 275.4 184 65.8
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 1.0e-67 261.5 159 71.1
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 4.5e-63 246.1 217 59.4
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 1.1e-50 204.9 128 68.8
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 2.2e-41 174.1 142 57.7
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 7.0e-40 169.1 207 43.0
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 2.9e-38 163.7 166 52.4
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 5.9e-31 139.4 151 48.3
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.6e-28 131.3 178 42.1
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 1.0e-27 128.6 320 30.6
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 8.6e-22 109.0 346 25.4
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 3.3e-21 107.1 288 27.8
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 2.6e-18 97.4 384 26.3
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 2.9e-17 94.0 65 69.2
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 3.3e-13 80.5 55 69.1
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 2.1e-12 77.8 80 55.0
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 5.8e-10 69.7 102 37.3
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 2.9e-09 67.4 166 31.3
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 6.4e-09 66.2 61 50.8
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 6.4e-09 66.2 61 50.8
ATR0582G303 Amborella trichopoda HOM05D005705 ORTHO05D007152 4.6e-07 60.1 265 24.9


User provided reference genes

Program Settings