Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 2.2e-282 974.9 484 100.0
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 2.9e-210 735.3 466 78.5
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 1.9e-201 706.1 415 81.2
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 3.7e-197 691.8 489 71.2
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 4.9e-189 664.8 475 67.6
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 7.1e-188 661.0 496 70.6
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 2.1e-187 659.4 410 74.6
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 1.1e-185 653.7 464 70.0
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 3.3e-185 652.1 422 73.0
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 6.8e-183 644.4 477 67.7
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 4.4e-182 641.7 416 71.4
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 9.9e-182 640.6 401 73.3
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 1.3e-181 640.2 478 66.3
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 1.2e-179 633.6 481 64.4
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 1.6e-179 633.3 477 64.8
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 1.6e-179 633.3 481 63.6
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 2.1e-179 632.9 452 67.3
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 2.7e-179 632.5 483 65.2
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 4.6e-179 631.7 452 67.0
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 6.0e-179 631.3 420 68.8
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 6.0e-179 631.3 443 66.8
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 1.0e-178 630.6 484 64.9
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 3.0e-178 629.0 444 68.2
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 3.9e-178 628.6 475 64.8
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 5.1e-178 628.2 482 62.9
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 5.1e-178 628.2 477 65.0
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 1.1e-177 627.1 482 64.3
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 2.5e-177 625.9 441 66.4
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 2.5e-177 625.9 421 70.1
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 2.5e-177 625.9 420 68.1
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 3.3e-177 625.5 417 69.8
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 4.3e-177 625.2 456 65.4
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 7.3e-177 624.4 477 63.7
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 1.6e-176 623.2 441 65.8
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 1.6e-176 623.2 416 69.2
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 3.6e-176 622.1 443 66.1
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 4.7e-176 621.7 413 69.5
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 6.2e-176 621.3 393 71.8
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.8e-175 619.8 459 65.6
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 1.8e-175 619.8 454 65.2
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 3.1e-175 619.0 477 63.7
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 4.0e-175 618.6 416 68.8
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 5.2e-175 618.2 473 63.6
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 6.9e-175 617.8 452 65.7
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 9.0e-175 617.5 393 71.8
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 1.2e-174 617.1 416 68.5
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 2.0e-174 616.3 444 65.5
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 3.4e-174 615.5 480 63.3
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 5.8e-174 614.8 482 63.3
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 7.6e-174 614.4 484 62.8
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 9.9e-174 614.0 465 64.1
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 3.8e-173 612.1 424 67.7
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 8.4e-173 610.9 478 63.2
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.1e-172 610.5 491 62.1
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 1.1e-172 610.5 480 62.5
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 1.1e-172 610.5 477 62.5
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 1.1e-172 610.5 478 63.2
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 1.4e-172 610.1 484 61.6
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 3.2e-172 609.0 468 63.5
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 4.2e-172 608.6 475 62.1
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 5.4e-172 608.2 479 62.8
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 9.3e-172 607.4 480 63.1
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 1.2e-171 607.1 435 65.5
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 1.6e-171 606.7 461 63.6
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 2.1e-171 606.3 480 62.9
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 2.1e-171 606.3 480 62.9
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 2.7e-171 605.9 438 66.0
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 3.5e-171 605.5 452 63.7
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 6.0e-171 604.7 441 65.3
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 2.3e-170 602.8 480 62.7
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 2.3e-170 602.8 479 62.6
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 3.9e-170 602.1 485 61.2
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 3.9e-170 602.1 473 62.8
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 2.5e-169 599.4 416 68.3
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 1.3e-168 597.0 458 62.0
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 4.8e-168 595.1 392 71.7
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 4.8e-168 595.1 413 65.4
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 3.1e-167 592.4 416 66.3
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 5.3e-167 591.7 444 65.3
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 5.3e-167 591.7 487 61.4
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 9.0e-167 590.9 482 62.2
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 2.6e-166 589.3 427 65.3
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 9.9e-166 587.4 483 61.3
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 6.4e-165 584.7 408 66.2
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.4e-164 583.6 396 65.2
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 3.2e-164 582.4 471 60.9
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 4.6e-163 578.6 479 62.6
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 1.9e-161 573.2 373 72.9
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 3.3e-161 572.4 384 66.4
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 3.1e-159 565.8 307 83.4
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 5.3e-159 565.1 405 62.0
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 2.6e-158 562.8 487 58.9
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 3.4e-158 562.4 382 67.5
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 7.6e-158 561.2 426 65.0
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.3e-157 560.5 356 72.8
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.1e-155 553.1 457 57.3
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 7.4e-153 544.7 355 69.9
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 9.0e-151 537.7 435 58.9
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 1.3e-149 533.9 421 60.3
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 1.3e-146 523.9 409 65.0
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 5.7e-145 518.5 423 62.4
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 7.4e-145 518.1 354 65.5
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 3.3e-137 492.7 329 70.5
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 1.7e-136 490.3 362 66.9
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 4.2e-132 475.7 359 63.5
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 3.7e-120 436.0 415 50.8
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 8.2e-120 434.9 414 50.0
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 1.7e-117 427.2 403 50.1
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 1.9e-116 423.7 394 51.3
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 3.1e-111 406.4 427 50.1
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 2.0e-105 387.1 434 44.9
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 2.6e-105 386.7 248 72.6
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 7.5e-105 385.2 315 63.5
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 3.8e-93 346.3 281 65.8
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.2e-86 324.7 262 56.5
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 7.8e-70 268.9 184 62.0
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 5.6e-68 262.7 159 70.4
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 9.5e-68 261.9 195 65.6
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 5.4e-63 246.1 243 51.4
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 1.6e-59 234.6 227 57.7
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.4e-55 221.5 155 67.1
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 8.7e-53 212.2 128 71.1
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 1.9e-39 167.9 142 52.8
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 9.7e-28 129.0 382 27.5
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.4e-26 125.2 405 27.2
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 3.4e-25 120.6 86 68.6
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 1.6e-22 111.7 347 28.2
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 1.8e-18 98.2 364 29.1
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 7.4e-12 76.3 55 69.1
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 4.8e-11 73.6 80 55.0
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.5e-09 68.6 103 37.9
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.0e-08 65.9 166 31.3
Rhsim08G0193700 Rhododendron simsii HOM05D005705 ORTHO05D007152 2.5e-07 61.2 243 23.5
Cc08_g11650 Coffea canephora HOM05D005705 ORTHO05D007152 3.2e-07 60.8 209 24.9
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 4.2e-07 60.5 61 49.2
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 4.2e-07 60.5 61 49.2
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 9.4e-07 59.3 55 49.1
DCAR_026236 Daucus carota HOM05D005705 ORTHO05D007152 1.2e-06 58.9 184 25.0
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 4.7e-06 57.0 89 39.3


User provided reference genes

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