Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 0.0e+00 1184.5 583 100.0
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 6.7e-302 1040.0 583 87.1
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 4.2e-280 967.6 546 83.5
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 1.4e-278 962.6 569 80.1
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 5.2e-278 960.7 585 78.8
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 4.1e-275 951.0 561 79.5
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 7.0e-275 950.3 555 80.9
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 7.0e-275 950.3 555 80.9
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 9.2e-275 949.9 582 78.0
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 1.2e-274 949.5 574 77.7
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 1.6e-274 949.1 567 79.7
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 4.5e-274 947.6 560 79.5
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 1.0e-273 946.4 546 81.9
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.3e-273 946.0 574 78.0
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 1.7e-273 945.7 582 78.7
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 2.9e-273 944.9 572 78.7
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 3.9e-273 944.5 576 80.4
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 6.6e-273 943.7 583 77.7
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 8.6e-273 943.3 579 77.9
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 1.1e-272 943.0 582 77.7
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 1.1e-272 943.0 558 79.9
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.1e-272 943.0 583 77.7
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 3.3e-272 941.4 555 80.5
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 4.3e-272 941.0 574 77.9
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 7.3e-272 940.3 545 80.9
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 7.3e-272 940.3 579 77.9
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 7.3e-272 940.3 592 76.4
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 9.5e-272 939.9 567 79.4
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 1.2e-271 939.5 594 76.4
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.2e-271 939.5 571 78.1
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 2.1e-271 938.7 583 77.0
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 3.6e-271 937.9 591 75.8
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 6.1e-271 937.2 587 76.5
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 8.0e-271 936.8 545 81.5
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.0e-270 936.4 547 80.8
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 1.0e-270 936.4 577 77.1
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.4e-270 936.0 577 76.9
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.8e-270 935.6 592 76.2
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 2.3e-270 935.3 580 76.4
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 2.3e-270 935.3 584 76.4
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 2.3e-270 935.3 595 75.1
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 3.1e-270 934.9 586 76.5
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.0e-270 934.5 593 75.5
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 4.0e-270 934.5 620 73.7
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 4.0e-270 934.5 606 74.8
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 5.2e-270 934.1 581 77.6
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 5.2e-270 934.1 583 76.5
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 6.8e-270 933.7 590 75.1
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 6.8e-270 933.7 583 76.3
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 8.9e-270 933.3 580 76.7
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 2.6e-269 931.8 587 75.1
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 2.6e-269 931.8 569 76.6
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 4.4e-269 931.0 583 76.7
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 4.4e-269 931.0 574 76.8
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 7.5e-269 930.2 552 79.2
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 9.8e-269 929.9 569 76.6
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.7e-268 929.1 547 79.7
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 1.7e-268 929.1 593 74.9
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 2.9e-268 928.3 583 76.2
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 2.9e-268 928.3 592 74.7
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 3.7e-268 927.9 580 76.0
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 4.9e-268 927.5 568 76.6
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 6.4e-268 927.2 570 77.9
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.4e-267 926.0 585 76.6
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.9e-267 925.6 580 76.0
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 3.2e-267 924.9 552 78.8
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.1e-267 924.5 582 76.3
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 5.4e-267 924.1 583 75.8
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 1.2e-266 922.9 565 77.5
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 4.6e-266 921.0 582 76.3
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 1.3e-265 919.5 586 74.7
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.3e-265 919.5 582 75.9
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 2.3e-265 918.7 565 77.2
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 3.0e-265 918.3 583 75.8
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 6.6e-265 917.1 586 74.4
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 8.6e-265 916.8 566 76.9
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 2.5e-264 915.2 583 74.6
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 2.5e-264 915.2 582 75.6
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 3.3e-264 914.8 543 79.4
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 3.3e-264 914.8 565 77.0
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 4.3e-264 914.4 633 70.8
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 4.3e-264 914.4 543 78.5
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 5.6e-264 914.1 586 74.1
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 7.3e-264 913.7 546 78.9
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 2.8e-263 911.8 571 76.0
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 2.8e-263 911.8 586 73.5
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 2.8e-263 911.8 545 78.3
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 4.7e-263 911.0 571 76.0
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 8.0e-263 910.2 586 74.1
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 1.1e-262 909.8 586 73.5
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 2.3e-262 908.7 579 76.0
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 3.1e-262 908.3 590 73.7
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 6.8e-262 907.1 587 73.9
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 6.8e-262 907.1 537 79.3
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 2.6e-261 905.2 574 76.1
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 1.7e-260 902.5 517 82.0
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.2e-260 902.1 574 75.3
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 3.0e-257 891.7 531 79.1
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 6.6e-257 890.6 548 77.9
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 1.1e-256 889.8 578 74.7
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.5e-256 889.4 582 72.9
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 3.3e-256 888.3 546 75.6
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 5.6e-256 887.5 564 75.4
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 2.1e-255 885.6 582 72.9
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 6.2e-255 884.0 583 73.4
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 5.2e-254 880.9 558 75.8
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 6.8e-254 880.6 558 75.8
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 1.1e-251 873.2 687 64.2
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 3.6e-247 858.2 532 75.4
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.2e-242 843.2 547 72.2
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 6.0e-242 840.9 582 70.3
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 7.9e-234 813.9 572 70.6
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 4.9e-228 794.7 565 69.9
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 8.4e-228 793.9 547 68.9
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 1.6e-226 789.6 548 68.1
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 3.5e-226 788.5 549 70.5
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 6.7e-225 784.3 480 76.5
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 1.1e-224 783.5 448 83.0
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 4.0e-222 775.0 448 81.9
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 5.5e-219 764.6 549 65.9
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.6e-218 763.1 560 67.9
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.5e-216 756.5 439 81.1
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 8.5e-204 714.1 517 67.5
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 8.0e-186 654.4 449 69.7
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.4e-184 648.7 480 67.1
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 1.1e-179 634.0 539 58.4
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 5.0e-172 608.6 361 78.7
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 1.2e-157 560.8 344 76.7
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.6e-154 550.4 569 52.2
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 5.1e-140 502.3 561 47.2
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 7.3e-139 498.4 322 75.2
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 3.7e-135 486.1 280 80.4
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 4.9e-135 485.7 521 52.2
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 2.7e-133 479.9 278 80.9
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 5.2e-129 465.7 417 58.3
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 4.2e-126 456.1 286 76.9
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 3.6e-114 416.4 573 42.9
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 3.7e-106 389.8 288 64.2
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.5e-96 357.8 654 36.2
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 1.6e-85 321.2 184 81.0
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 1.4e-84 318.2 263 63.1
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 1.2e-80 305.1 599 35.2
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 2.2e-79 300.8 179 79.3
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.9e-78 297.7 179 78.2
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 5.5e-78 296.2 188 72.3
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.2e-77 295.0 587 35.1
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 1.4e-76 291.6 497 37.4
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 1.7e-71 274.6 167 75.4
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.0e-63 248.8 321 46.1
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 8.5e-63 245.7 611 32.2
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.5e-62 243.0 140 82.9
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.7e-58 231.5 596 29.9
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 4.1e-57 226.9 157 67.5
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.6e-47 193.0 117 78.6
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 2.0e-43 181.4 120 75.0
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.4e-41 175.3 100 82.0
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 5.4e-41 173.3 155 58.7
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 1.6e-40 171.8 106 75.5
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.4e-36 158.7 119 63.0
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.6e-30 136.7 110 61.8
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 1.8e-28 131.7 67 88.1
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 2.6e-27 127.9 65 89.2
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 1.3e-26 125.6 77 72.7
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 5.4e-25 120.2 92 59.8
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 2.8e-21 107.8 137 41.6
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 1.9e-17 95.1 52 82.7
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.2e-12 77.0 54 72.2
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 9.3e-09 66.2 38 73.7
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 2.1e-08 65.1 78 51.3
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 8.7e-07 59.7 64 46.9


User provided reference genes

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