Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 0.0e+00 1988.0 1051 100.0
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 0.0e+00 1166.0 1044 62.2
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 2.8e-274 949.1 1044 55.2
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 3.6e-253 879.0 1237 44.1
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 8.8e-252 874.4 1185 44.9
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 1.7e-247 860.1 1293 42.6
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 7.0e-241 838.2 1190 43.9
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 5.6e-238 828.6 1132 44.6
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 5.4e-233 812.0 1268 41.3
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 5.0e-231 805.4 1096 45.1
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 9.8e-227 791.2 1177 42.9
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 4.9e-226 788.9 1159 42.5
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 3.2e-225 786.2 1115 44.0
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 5.4e-225 785.4 1137 42.3
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 9.2e-225 784.6 1147 43.0
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 2.0e-224 783.5 1255 40.5
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.5e-222 776.5 1224 41.5
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.1e-220 769.6 1213 41.6
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 8.9e-220 768.1 1256 40.1
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 2.0e-219 766.9 1203 41.9
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.9e-217 760.4 1143 41.7
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 4.6e-216 755.7 1132 42.0
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 7.8e-216 755.0 1235 40.7
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.3e-215 754.2 1134 41.9
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 6.6e-215 751.9 1254 40.3
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 5.8e-211 738.8 1213 39.9
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 1.4e-209 734.2 1250 39.8
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 2.3e-207 726.9 1166 41.4
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 5.1e-207 725.7 1208 40.4
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 4.7e-205 719.2 1331 37.8
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 4.7e-205 719.2 1326 38.5
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 8.9e-204 714.9 1228 39.7
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 2.1e-200 703.7 1250 38.3
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 7.8e-200 701.8 1320 36.5
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 1.5e-198 697.6 1267 39.4
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 2.5e-198 696.8 1311 36.8
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 3.3e-198 696.4 1105 41.7
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 4.3e-198 696.0 1249 38.3
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 4.8e-197 692.6 1300 36.8
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 1.4e-196 691.0 1291 36.6
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 9.9e-195 684.9 1272 36.6
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 2.2e-194 683.7 1063 41.5
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.8e-194 682.9 1100 41.5
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 7.9e-192 675.2 1247 37.4
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 5.6e-190 669.1 1275 36.8
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 2.1e-189 667.2 1277 36.6
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 8.1e-189 665.2 1223 36.7
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 1.4e-188 664.5 1362 35.4
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 2.4e-188 663.7 1265 37.0
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 9.0e-188 661.8 1306 35.9
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 2.0e-187 660.6 1313 35.9
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.9e-185 654.1 1089 39.7
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 5.5e-185 652.5 1307 35.3
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 6.7e-183 645.6 1227 36.2
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 9.6e-182 641.7 1223 38.2
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 2.4e-180 637.1 1242 37.1
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 5.8e-179 632.5 1229 37.1
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 2.5e-174 617.1 1212 35.3
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 7.4e-174 615.5 758 46.3
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 2.8e-173 613.6 1219 36.3
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 4.8e-173 612.8 1082 38.4
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 8.2e-173 612.1 954 41.6
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 1.8e-172 610.9 1169 36.8
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 1.1e-169 601.7 1062 37.4
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 2.5e-169 600.5 1047 37.1
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 2.1e-168 597.4 1084 37.1
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 2.1e-168 597.4 1266 35.4
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 3.0e-167 593.6 1047 37.2
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 1.9e-166 590.9 1067 37.4
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 2.5e-166 590.5 1184 36.5
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 4.3e-166 589.7 1051 37.0
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 2.8e-165 587.0 1092 38.2
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 3.7e-165 586.6 1062 36.8
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 4.8e-165 586.3 1093 37.1
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 7.2e-161 572.4 1199 35.7
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 1.6e-160 571.2 1045 36.9
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 4.6e-160 569.7 1254 34.1
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 4.8e-157 559.7 1179 36.0
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 3.1e-156 557.0 1091 36.5
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 1.2e-155 555.1 1313 32.9
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.7e-154 551.2 1066 36.7
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 2.4e-148 530.8 792 42.0
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 2.2e-138 497.7 1024 34.6
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 2.7e-136 490.7 1170 32.0
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 2.8e-133 480.7 1060 34.4
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 2.0e-115 421.4 781 36.5
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 3.1e-111 407.5 749 37.2
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 4.7e-104 383.6 718 36.8
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 1.4e-103 382.1 1047 29.5
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 3.8e-93 347.4 538 40.7
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 1.7e-90 338.6 811 31.8
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 8.1e-80 303.1 620 35.5
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 3.9e-74 284.3 581 35.8
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.1e-65 256.1 243 53.5
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 9.6e-65 253.1 271 49.4
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 5.8e-62 243.8 254 50.8
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 2.5e-57 228.4 149 70.5
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 5.3e-55 220.7 346 37.3
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 4.6e-51 207.6 658 31.6
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 3.4e-46 191.4 817 25.0
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 2.9e-45 188.3 682 26.0
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 3.6e-43 181.4 318 41.8
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 2.0e-41 175.6 105 73.3
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.8e-39 169.1 366 33.9
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.5e-33 149.4 564 25.0
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 2.2e-32 145.6 145 47.6
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 1.3e-29 136.3 152 46.1
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.1e-23 115.2 173 39.3
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 6.8e-18 97.4 321 28.3
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 2.0e-17 95.9 173 35.8
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 2.8e-16 92.0 102 46.1
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.1e-15 88.6 102 51.0
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 4.1e-15 88.2 179 34.1
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 7.0e-15 87.4 74 47.3
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 4.2e-12 78.2 77 45.5
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 5.5e-12 77.8 77 45.5
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 1.8e-10 72.8 146 29.5
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 4.0e-10 71.6 285 28.1
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 8.9e-10 70.5 97 43.3
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.0e-09 69.3 262 30.2
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 1.1e-07 63.5 149 30.9
CDE08G0044 Ceratophyllum demersum HOM05D002300 ORTHO05D002340 1.1e-07 63.5 166 25.9
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 1.4e-07 63.2 65 50.8
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.4e-07 62.4 66 45.5
Pp3c7_3950 Physcomitrium patens HOM05D002300 ORTHO05D002340 3.1e-07 62.0 153 24.2
BcaC02g12397 Brassica carinata HOM05D002300 ORTHO05D002340 4.1e-07 61.6 116 30.2
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 4.1e-07 61.6 208 27.9
AT2G43410 Arabidopsis thaliana HOM05D002300 ORTHO05D002340 9.2e-07 60.5 107 29.9
C04p04460 Brassica napus HOM05D002300 ORTHO05D002340 9.2e-07 60.5 116 29.3
Thhalv10001307m.g Eutrema salsugineum HOM05D002300 ORTHO05D002340 2.0e-06 59.3 130 27.7
Solyc04g077950.2 Solanum lycopersicum HOM05D001879 ORTHO05D007648 2.0e-06 59.3 46 60.9
A09p51810 Brassica napus HOM05D002300 ORTHO05D002340 4.5e-06 58.2 113 31.0
BraA09t40616Z Brassica rapa HOM05D002300 ORTHO05D002340 4.5e-06 58.2 113 31.0
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 4.5e-06 58.2 133 36.8
Sp4g25510 Schrenkiella parvula HOM05D002300 ORTHO05D002340 4.5e-06 58.2 116 28.4
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 5.9e-06 57.8 194 28.4
BcaC07g40485 Brassica carinata HOM05D002300 ORTHO05D002340 5.9e-06 57.8 115 30.4
AL4G42150 Arabidopsis lyrata HOM05D002300 ORTHO05D002340 7.8e-06 57.4 107 29.0


User provided reference genes

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