Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 8.1e-154 547.0 265 100.0
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 3.1e-121 438.7 265 81.1
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 1.2e-117 426.8 262 79.4
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 7.4e-115 417.5 260 78.5
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.7e-106 389.8 261 70.1
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 1.7e-106 389.8 261 72.0
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 1.4e-105 386.7 260 70.8
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 2.4e-105 386.0 260 71.2
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 5.3e-105 384.8 277 67.9
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.2e-104 383.6 262 69.5
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 2.0e-104 382.9 260 71.2
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 2.0e-104 382.9 260 71.5
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 2.0e-104 382.9 260 69.6
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 2.7e-104 382.5 260 71.9
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 3.5e-104 382.1 260 71.2
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 3.5e-104 382.1 261 70.1
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 3.5e-104 382.1 263 69.6
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 4.5e-104 381.7 266 69.2
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 5.9e-104 381.3 261 69.0
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 7.7e-104 380.9 265 68.3
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.0e-103 380.6 260 71.5
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 1.3e-103 380.2 260 70.0
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.7e-103 379.8 260 70.8
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 2.2e-103 379.4 260 69.6
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 6.5e-103 377.9 261 68.6
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 8.5e-103 377.5 261 68.6
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 8.5e-103 377.5 261 68.6
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 1.1e-102 377.1 261 68.6
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.5e-102 376.7 261 69.3
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.5e-102 376.7 261 69.3
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 1.5e-102 376.7 258 69.8
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 2.5e-102 375.9 261 68.6
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 4.2e-102 375.2 264 68.6
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 5.5e-102 374.8 260 67.3
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 9.4e-102 374.0 260 70.4
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 9.4e-102 374.0 263 68.4
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.2e-101 373.6 260 70.0
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 1.6e-101 373.2 260 68.8
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 2.7e-101 372.5 259 68.3
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 3.6e-101 372.1 261 67.0
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 3.6e-101 372.1 259 68.3
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 6.1e-101 371.3 264 69.7
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 6.1e-101 371.3 259 69.9
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 3.0e-100 369.0 260 68.8
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 3.0e-100 369.0 260 67.3
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 4.0e-100 368.6 260 69.2
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 5.2e-100 368.2 260 67.3
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 6.8e-100 367.9 273 66.3
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 8.8e-100 367.5 259 68.3
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.2e-99 367.1 260 67.7
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 2.0e-99 366.3 267 66.7
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 2.6e-99 365.9 263 67.3
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.6e-99 365.9 261 69.0
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.4e-99 365.2 260 69.6
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 5.7e-99 364.8 261 69.3
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 5.7e-99 364.8 233 72.1
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 9.8e-99 364.0 262 66.4
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 1.7e-98 363.2 260 67.3
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 1.7e-98 363.2 260 67.7
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 2.8e-98 362.5 261 69.7
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 2.8e-98 362.5 260 69.2
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 3.7e-98 362.1 258 67.8
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 3.7e-98 362.1 260 66.9
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 4.8e-98 361.7 259 66.8
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.1e-97 360.5 261 65.9
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.4e-97 360.1 260 65.4
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 1.8e-97 359.8 266 67.3
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 2.4e-97 359.4 264 64.0
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 4.1e-97 358.6 259 66.4
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 7.0e-97 357.8 259 65.6
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 7.0e-97 357.8 260 66.5
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.2e-96 357.1 260 66.2
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.0e-96 356.3 264 62.9
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 2.0e-96 356.3 262 64.5
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 2.7e-96 355.9 275 64.0
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 7.7e-96 354.4 264 62.9
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 2.9e-95 352.4 261 65.5
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 8.6e-95 350.9 262 64.1
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.1e-94 350.5 260 64.2
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.5e-94 350.1 260 63.8
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 2.5e-94 349.4 260 63.8
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 4.2e-94 348.6 264 62.9
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 4.2e-94 348.6 259 64.1
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 7.2e-94 347.8 264 61.7
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 7.2e-94 347.8 264 61.7
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 9.5e-94 347.4 264 62.1
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 9.5e-94 347.4 261 63.2
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 9.5e-94 347.4 261 63.2
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 1.2e-93 347.1 261 64.0
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 2.8e-93 345.9 261 62.8
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 3.6e-93 345.5 261 62.8
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 3.6e-93 345.5 258 65.5
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 3.6e-93 345.5 295 58.6
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 8.0e-93 344.4 260 62.7
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 8.0e-93 344.4 261 64.8
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 1.0e-92 344.0 260 65.4
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 1.4e-92 343.6 267 61.0
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.8e-92 343.2 264 62.1
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 2.3e-92 342.8 321 56.7
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 3.0e-92 342.4 261 62.8
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 1.5e-91 340.1 264 62.1
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 3.4e-91 339.0 261 62.8
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 9.8e-91 337.4 261 62.8
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 2.8e-90 335.9 260 62.7
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 5.4e-89 331.6 238 69.3
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 9.2e-89 330.9 264 61.0
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 1.7e-87 326.6 213 71.8
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 2.3e-87 326.2 214 70.6
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 3.9e-87 325.5 217 68.7
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.5e-86 323.6 259 60.2
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 6.1e-85 318.2 273 57.5
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 1.4e-84 317.0 264 60.6
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.8e-84 316.6 212 69.8
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.5e-83 313.5 213 67.1
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.3e-82 310.5 226 65.9
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 6.4e-82 308.1 273 56.0
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 7.0e-81 304.7 196 75.0
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 1.2e-80 303.9 188 76.1
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 1.2e-80 303.9 246 62.2
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 3.0e-79 299.3 239 61.5
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 1.1e-78 297.4 184 75.0
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.9e-78 296.6 189 75.1
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 3.6e-77 292.4 189 70.9
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 8.0e-77 291.2 188 74.5
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 2.3e-76 289.7 238 57.6
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 9.8e-75 284.3 245 55.5
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 9.8e-75 284.3 260 54.2
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 1.4e-73 280.4 205 66.3
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 3.9e-71 272.3 313 49.8
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 1.1e-70 270.8 170 75.9
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 2.5e-70 269.6 262 51.1
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.6e-69 266.9 372 44.1
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 8.3e-66 254.6 226 56.6
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 6.6e-63 245.0 260 47.3
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 2.8e-61 239.6 184 65.8
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 7.6e-59 231.5 233 50.6
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.6e-53 213.8 185 56.2
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.6e-53 212.6 269 46.8
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 3.1e-52 209.5 155 63.9
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 1.3e-50 204.1 212 51.4
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 3.5e-48 196.1 178 55.6
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 4.5e-43 179.1 252 41.3
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.2e-41 172.9 132 62.9
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.6e-40 169.1 103 76.7
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 3.0e-39 166.4 140 56.4
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 1.5e-38 164.1 145 56.6
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.5e-38 163.3 132 60.6
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 6.2e-37 158.7 301 35.5
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 9.0e-36 154.8 275 35.6
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 3.4e-35 152.9 96 70.8
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.1e-32 143.7 182 44.5
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.8e-26 122.9 148 43.2
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 5.0e-26 122.5 172 43.6
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.5e-25 120.2 132 48.5
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.1e-22 111.3 102 53.9
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.0e-19 100.5 128 44.5
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-16 90.9 79 54.4
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.8e-15 87.4 58 69.0
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.3e-15 87.0 79 54.4
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 2.0e-14 84.0 52 75.0
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 2.0e-14 84.0 52 75.0
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 2.2e-13 80.5 55 65.5
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 3.6e-08 63.2 47 59.6
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 2.0e-06 57.4 40 55.0
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 2.6e-06 57.0 45 51.1
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 3.3e-06 56.6 37 67.6
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 9.7e-06 55.1 40 55.0
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 9.7e-06 55.1 40 55.0


User provided reference genes

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