Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1938.3 1006 100.0
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1665.2 1014 84.6
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1581.6 984 85.2
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1468.4 1019 73.9
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1451.8 1012 73.9
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1425.2 997 72.8
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1421.8 1020 71.3
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1421.8 1018 71.9
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1418.3 1012 72.2
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1415.6 1016 70.9
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1404.0 1025 70.2
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1403.7 1029 70.4
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1403.3 1016 71.2
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1402.1 997 71.3
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1400.6 1017 70.6
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1398.3 997 71.5
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1397.1 992 72.0
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1395.2 1013 70.9
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1391.7 1027 70.5
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1390.2 1019 69.2
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1387.9 1013 70.6
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1386.7 994 71.8
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1385.2 1001 71.1
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1379.8 994 71.3
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1379.4 993 71.5
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1378.2 1019 69.9
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1378.2 1029 70.1
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1378.2 1029 70.1
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1376.3 1012 70.5
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1373.6 996 70.0
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1371.3 1021 69.4
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1370.9 1015 69.0
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1370.1 1019 68.7
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1368.6 1022 70.1
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1367.4 1012 70.4
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1367.1 998 71.2
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1366.3 1002 70.1
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1364.7 997 70.3
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1362.8 1012 70.2
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1361.3 1000 69.9
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1361.3 1006 70.1
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1360.1 1045 68.2
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1359.7 1026 69.5
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1353.2 1015 69.1
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1352.0 1031 68.8
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1350.1 1027 69.3
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1347.0 998 70.3
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1346.3 1022 68.5
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1346.3 1015 68.3
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1345.1 1017 68.8
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1343.2 1011 69.5
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1342.4 1018 68.9
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1340.1 999 69.3
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1339.7 1008 69.4
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1339.7 1018 67.0
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1339.3 1026 68.9
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1339.3 997 69.9
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1339.3 971 70.4
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 997 69.0
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1338.2 1002 69.0
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1333.9 1017 67.6
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1333.5 1018 68.1
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1331.6 1007 69.1
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1330.9 1004 68.9
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1330.9 1016 68.4
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1329.3 1020 68.4
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1328.9 1069 66.2
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1328.2 1016 68.3
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1323.5 1035 67.3
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1320.8 1026 67.4
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1319.3 1020 67.0
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1316.2 994 68.7
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1315.4 1033 67.1
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1314.3 1027 66.1
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1312.0 1005 68.8
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1307.4 1013 68.4
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1304.3 1021 66.8
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1303.1 1024 66.9
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1300.8 1029 67.6
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1299.6 995 67.0
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1295.8 1000 66.9
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1288.5 1024 65.8
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1286.6 1007 64.9
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1286.2 1024 65.6
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1284.6 1003 66.9
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1284.6 935 70.1
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1282.3 1052 64.0
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1278.1 1001 66.1
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1278.1 1018 66.4
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1271.5 1004 66.2
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1269.2 1029 64.2
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1268.1 1022 65.5
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1266.5 1018 65.0
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1265.8 1001 66.5
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1265.8 1001 66.0
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1264.6 1028 66.0
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1260.7 1013 64.3
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1260.0 1024 65.0
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1253.8 999 65.4
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1253.0 1024 64.8
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1250.0 1024 64.4
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1249.6 999 65.2
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1248.4 999 65.0
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1243.8 882 73.0
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1242.6 1023 63.8
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1236.1 1017 64.9
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1228.0 884 72.4
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1221.8 1018 63.9
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1217.6 915 69.9
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1216.8 1024 63.2
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1216.4 1006 64.6
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1213.0 1024 63.4
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1212.6 983 65.6
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1202.6 1022 63.0
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1195.6 998 64.3
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1191.4 1040 61.9
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1191.0 1034 61.2
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1179.1 1003 62.0
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1165.6 1008 62.1
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1155.6 1018 61.8
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1146.7 1021 61.2
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1127.9 1022 59.9
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1121.7 924 64.4
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1118.2 989 61.2
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1114.4 1045 58.8
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1102.0 983 60.0
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1078.2 1027 57.0
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 7.8e-306 1053.9 859 64.4
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 9.2e-291 1003.8 1035 56.8
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 9.9e-285 983.8 972 55.0
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 9.3e-275 950.7 892 56.7
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 2.4e-270 936.0 828 61.0
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 8.1e-263 911.0 798 63.3
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 2.0e-261 906.4 703 69.8
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 4.2e-259 898.7 984 51.3
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 7.9e-250 867.8 1057 47.9
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 2.2e-239 833.2 739 64.3
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.0e-233 812.8 981 46.0
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 9.7e-232 807.7 971 46.2
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 9.1e-230 801.2 1029 45.2
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 6.3e-223 778.5 825 51.5
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.4e-217 760.8 808 52.2
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 8.9e-201 704.9 902 46.1
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.8e-193 680.6 666 57.1
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 3.4e-192 676.4 704 58.1
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 3.7e-175 619.8 846 46.1
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 5.1e-172 609.4 621 55.6
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.3e-167 594.7 950 39.9
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 2.4e-153 547.4 660 50.5
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.5e-147 527.3 582 51.5
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 2.1e-138 497.7 1124 33.1
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.0e-132 477.2 610 46.7
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.1e-121 442.2 396 56.1
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 2.0e-115 421.4 595 44.4
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 4.8e-106 390.2 311 69.1
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 7.0e-105 386.3 529 43.9
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.3e-90 339.0 231 77.1
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 3.4e-83 314.3 255 65.9
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 9.8e-83 312.8 310 56.1
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.8e-81 308.5 254 65.7
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 3.1e-68 264.6 628 33.6
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 6.9e-52 210.3 219 49.3
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.2e-49 201.4 215 47.4
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 4.2e-49 201.1 519 29.5
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 1.1e-44 186.4 922 23.3
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.8e-42 177.9 172 50.6
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 2.7e-40 171.8 165 55.8
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 5.1e-39 167.5 149 53.7
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 2.5e-38 165.2 146 59.6
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.2e-35 156.4 186 51.1
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 6.7e-31 140.6 130 53.8
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 9.3e-25 120.2 96 57.3
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.1e-24 119.0 114 51.8
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 2.7e-24 118.6 88 60.2
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 8.7e-15 87.0 63 74.6
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 2.2e-13 82.4 143 35.0
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 8.2e-13 80.5 54 77.8
HanXRQChr15g0483121 Helianthus annuus HOM05D000166 ORTHO05D016877 1.5e-06 59.7 33 78.8


User provided reference genes

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