Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 5.4e-148 528.5 477 100.0
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 1.0e-58 231.9 356 67.7
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 2.2e-56 224.2 263 47.1
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 2.4e-55 220.7 234 51.7
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 1.1e-52 211.8 319 63.6
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 1.2e-49 201.8 315 59.0
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 8.3e-48 195.7 234 51.3
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 5.4e-47 193.0 219 48.4
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 1.2e-46 191.8 233 49.8
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 1.2e-43 181.8 268 41.4
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 2.1e-43 181.0 233 44.6
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 3.0e-42 177.2 249 56.2
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 1.5e-41 174.9 236 47.5
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 1.7e-40 171.4 235 44.7
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 7.8e-38 162.5 233 43.8
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 2.3e-37 161.0 280 36.8
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 2.3e-34 151.0 177 46.3
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 2.3e-34 151.0 233 43.3
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 7.5e-33 146.0 215 39.1
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 9.8e-33 145.6 235 55.3
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 9.8e-33 145.6 257 37.0
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 3.7e-32 143.7 203 41.9
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 6.4e-32 142.9 174 45.4
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 6.4e-32 142.9 174 45.4
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 1.9e-31 141.4 234 54.7
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 1.9e-31 141.4 239 53.6
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 2.0e-30 137.9 228 53.5
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 3.5e-30 137.1 164 45.7
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 3.3e-28 130.6 233 39.5
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 2.1e-27 127.9 228 53.9
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 8.1e-27 125.9 296 43.9
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 8.1e-27 125.9 220 52.3
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 1.4e-26 125.2 218 53.2
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 4.0e-26 123.6 233 49.8
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 5.2e-26 123.2 221 50.7
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 2.0e-25 121.3 219 50.2
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 3.4e-25 120.6 99 58.6
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 5.8e-25 119.8 103 57.3
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 7.5e-25 119.4 95 60.0
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 9.9e-25 119.0 175 38.9
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 1.9e-23 114.8 102 58.8
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 5.4e-23 113.2 154 40.3
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 2.7e-22 110.9 231 50.2
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 5.1e-21 106.7 223 40.8
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 1.1e-20 105.5 218 44.0
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 1.5e-20 105.1 95 53.7
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 4.3e-20 103.6 84 52.4
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 7.3e-20 102.8 84 54.8
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 7.3e-20 102.8 84 54.8
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 7.3e-20 102.8 83 53.0
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 9.5e-20 102.4 84 54.8
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 1.2e-19 102.1 84 53.6
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 3.6e-19 100.5 232 46.1
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 4.7e-19 100.1 84 53.6
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 8.1e-19 99.4 100 50.0
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 8.1e-19 99.4 100 50.0
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 1.8e-18 98.2 84 51.2
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 5.2e-18 96.7 219 34.7
Lj5P156T63 Lonicera japonica HOM05D006707 ORTHO05D008243 8.9e-18 95.9 73 64.4
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 1.2e-17 95.5 233 46.8
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 1.2e-17 95.5 234 47.4
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 2.0e-17 94.7 231 47.6
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 2.6e-17 94.4 71 62.0
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 3.4e-17 94.0 233 47.2
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 3.4e-17 94.0 68 64.7
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 3.4e-17 94.0 68 64.7
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 7.6e-17 92.8 233 34.8
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 2.9e-16 90.9 70 60.0
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 8.4e-16 89.4 84 46.4
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 1.1e-15 89.0 70 60.0
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 1.1e-15 89.0 237 45.6
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 1.9e-15 88.2 163 35.6
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 4.1e-15 87.0 68 57.4
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 4.1e-15 87.0 84 47.6
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 5.4e-15 86.7 68 58.8
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 7.1e-15 86.3 178 32.6
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 9.2e-15 85.9 70 58.6
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 2.1e-14 84.7 68 57.4
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.1e-14 84.7 67 56.7
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.5e-14 84.0 67 56.7
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.5e-14 84.0 67 56.7
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 4.6e-14 83.6 69 53.6
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 1.0e-13 82.4 65 55.4
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 1.3e-13 82.0 192 32.3
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 2.3e-13 81.3 69 55.1
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 3.0e-13 80.9 233 41.6
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 1.1e-12 79.0 90 42.2
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 1.5e-12 78.6 68 54.4
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 2.5e-12 77.8 66 51.5
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 9.6e-12 75.9 67 53.7
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 9.6e-12 75.9 67 53.7
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 9.6e-12 75.9 67 53.7
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.6e-11 75.1 229 41.9
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 4.7e-11 73.6 67 50.7
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 4.7e-11 73.6 70 50.0
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 4.7e-11 73.6 70 48.6
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 1.8e-10 71.6 56 53.6
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 2.4e-10 71.2 222 41.9
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 3.1e-10 70.9 176 34.7
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 3.1e-10 70.9 132 34.1
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 2.0e-09 68.2 70 45.7
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 2.0e-09 68.2 69 47.8
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 2.6e-09 67.8 63 52.4
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 2.6e-09 67.8 66 48.5
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 5.8e-09 66.6 177 30.5
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 7.6e-09 66.2 44 59.1
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 9.9e-09 65.9 62 46.8
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 3.8e-08 63.9 48 60.4
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 6.4e-08 63.2 65 43.1
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 4.2e-07 60.5 54 48.1
TAR622G0589 Trochodendron aralioides HOM05D000833 ORTHO05D000969 1.2e-06 58.9 109 30.3
TAR622G1267 Trochodendron aralioides HOM05D000001 ORTHO05D010426 1.2e-06 58.9 109 30.3
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 1.6e-06 58.5 32 78.1
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 4.6e-06 57.0 131 26.0
HPP92_027099 Vanilla planifolia HOM05D000001 ORTHO05D025798 6.0e-06 56.6 123 29.3
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 7.8e-06 56.2 30 80.0
vmacro20492 Vaccinium macrocarpon HOM05D000001 ORTHO05D010426 7.8e-06 56.2 111 31.5


User provided reference genes

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