Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G2410 Erigeron canadensis HOM05D004510 ORTHO05D005302 1.5e-68 262.7 133 100.0
ECA233G2492 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.5e-59 230.3 123 95.9
ECA233G5657 Erigeron canadensis HOM05D004510 ORTHO05D005302 1.7e-11 73.2 38 100.0
DCAR_010345 Daucus carota HOM05D004510 ORTHO05D005302 1.2e-09 67.0 38 89.5
HanXRQChr13g0397471 Helianthus annuus HOM05D004510 ORTHO05D005302 1.2e-09 67.0 40 87.5
PSO384G2406 Papaver somniferum HOM05D004510 ORTHO05D005302 1.6e-09 66.6 40 85.0
HanXRQChr16g0526961 Helianthus annuus HOM05D004510 ORTHO05D005302 3.6e-09 65.5 38 89.5
PSO339G0142 Papaver somniferum HOM05D004510 ORTHO05D005302 3.6e-09 65.5 40 82.5
ECA232G1330 Erigeron canadensis HOM05D002313 ORTHO05D003747 4.7e-09 65.1 42 78.6
Lj1C236G5 Lonicera japonica HOM05D004510 ORTHO05D005302 4.7e-09 65.1 38 86.8
Dinv22838 Davidia involucrata HOM05D004510 ORTHO05D005302 6.1e-09 64.7 40 82.5
TAR623G1468 Trochodendron aralioides HOM05D004510 ORTHO05D005302 6.1e-09 64.7 41 80.5
Ciclev10027862m.g Citrus clementina HOM05D004510 ORTHO05D005302 8.0e-09 64.3 43 74.4
Hma1.2p1_0587F.1_g184290 Hydrangea macrophylla HOM05D004510 ORTHO05D005302 8.0e-09 64.3 38 84.2
HanXRQChr09g0274371 Helianthus annuus HOM05D002313 ORTHO05D003747 1.0e-08 63.9 42 76.2
HanXRQChr16g0499321 Helianthus annuus HOM05D002313 ORTHO05D003747 1.4e-08 63.5 42 76.2
Lsat_1_v5_gn_6_38881 Lactuca sativa HOM05D004510 ORTHO05D005302 1.4e-08 63.5 37 89.2
Aa31LG5G8800 Aethionema arabicum HOM05D004510 ORTHO05D005302 1.8e-08 63.2 49 73.5
arahy.Tifrunner.gnm1.ann1.CJK6JS Arachis hypogaea HOM05D004510 ORTHO05D005302 1.8e-08 63.2 39 82.1
arahy.Tifrunner.gnm1.ann1.G66SVD Arachis hypogaea HOM05D004510 ORTHO05D005302 1.8e-08 63.2 39 82.1
Nn6g34880 Nelumbo nucifera HOM05D004510 ORTHO05D005302 2.3e-08 62.8 40 82.5
Atru.chr3.3236 Acer truncatum HOM05D004510 ORTHO05D005302 3.1e-08 62.4 38 84.2
BcaC02g10877 Brassica carinata HOM05D004510 ORTHO05D005302 3.1e-08 62.4 38 86.8
A04p20970 Brassica napus HOM05D004510 ORTHO05D005302 3.1e-08 62.4 38 86.8
A07p18220 Brassica napus HOM05D004510 ORTHO05D005302 3.1e-08 62.4 38 86.8
C04p24140 Brassica napus HOM05D004510 ORTHO05D005302 3.1e-08 62.4 38 86.8
BolC4t23911H Brassica oleracea HOM05D004510 ORTHO05D005302 3.1e-08 62.4 38 86.8
BolC4t27208H Brassica oleracea HOM05D004510 ORTHO05D005302 3.1e-08 62.4 38 86.8
BraA04t17666Z Brassica rapa HOM05D004510 ORTHO05D005302 3.1e-08 62.4 38 86.8
BraA07t29538Z Brassica rapa HOM05D004510 ORTHO05D005302 3.1e-08 62.4 38 86.8
CARHR120110 Cardamine hirsuta HOM05D004510 ORTHO05D005302 3.1e-08 62.4 38 86.8
Dinv42548 Davidia involucrata HOM05D004510 ORTHO05D005302 3.1e-08 62.4 40 80.0
Lsat_1_v5_gn_4_85420 Lactuca sativa HOM05D002313 ORTHO05D003747 3.1e-08 62.4 42 76.2
Manes.11G162300 Manihot esculenta HOM05D004510 ORTHO05D005302 3.1e-08 62.4 40 80.0
Sp4g10250 Schrenkiella parvula HOM05D004510 ORTHO05D005302 3.1e-08 62.4 38 86.8
Hund18760 Selenicereus undatus HOM05D004510 ORTHO05D005302 3.1e-08 62.4 38 81.6
THA.LOC104815723 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 3.1e-08 62.4 38 86.8
vmacro03323 Vaccinium macrocarpon HOM05D004510 ORTHO05D005302 3.1e-08 62.4 40 77.5
ClCG01G011910 Citrullus lanatus HOM05D004510 ORTHO05D005302 4.0e-08 62.0 38 86.8
Lsat_1_v5_gn_1_29960 Lactuca sativa HOM05D002313 ORTHO05D003747 4.0e-08 62.0 42 71.4
Potri.009G163300 Populus trichocarpa HOM05D004510 ORTHO05D005302 4.0e-08 62.0 38 84.2
Rhsim13G0112600 Rhododendron simsii HOM05D004510 ORTHO05D005302 4.0e-08 62.0 38 81.6
AL4G21450 Arabidopsis lyrata HOM05D004510 ORTHO05D005302 5.2e-08 61.6 38 84.2
AT2G27460 Arabidopsis thaliana HOM05D004510 ORTHO05D005302 5.2e-08 61.6 38 84.2
Carub.0004s0808 Capsella rubella HOM05D004510 ORTHO05D005302 5.2e-08 61.6 38 84.2
GSVIVG01036116001 Vitis vinifera HOM05D004510 ORTHO05D005302 5.2e-08 61.6 40 82.5
CsaV3_1G014870 Cucumis sativus L. HOM05D004510 ORTHO05D005302 6.8e-08 61.2 38 84.2
Aqoxy4G02763 Aquilegia oxysepala HOM05D004510 ORTHO05D005302 8.9e-08 60.8 37 83.8
CSS0020343 Camellia sinensis var. sinensis HOM05D004510 ORTHO05D005302 8.9e-08 60.8 38 81.6
MELO3C004700.2 Cucumis melo HOM05D004510 ORTHO05D005302 8.9e-08 60.8 38 84.2
Sabra09G0127400 Salix brachista HOM05D004510 ORTHO05D005302 8.9e-08 60.8 38 81.6
TWI31G0469 Tripterygium wilfordii HOM05D004510 ORTHO05D005302 8.9e-08 60.8 38 81.6
CiPaw.13G135100 Carya illinoinensis HOM05D004510 ORTHO05D005302 1.2e-07 60.5 39 79.5
Potri.004G201800 Populus trichocarpa HOM05D004510 ORTHO05D005302 1.2e-07 60.5 38 84.2
Sabra04G0136400 Salix brachista HOM05D004510 ORTHO05D005302 1.2e-07 60.5 38 84.2
Thecc.09G282400 Theobroma cacao HOM05D004510 ORTHO05D005302 1.2e-07 60.5 38 81.6
C04p56760 Brassica napus HOM05D004510 ORTHO05D005302 1.5e-07 60.1 38 81.6
PGR102G0622 Punica granatum HOM05D004510 ORTHO05D005302 1.5e-07 60.1 35 88.6
QL01p012154 Quercus lobata HOM05D004510 ORTHO05D005302 1.5e-07 60.1 37 81.1
BcaB02g10090 Brassica carinata HOM05D004510 ORTHO05D005302 2.0e-07 59.7 38 84.2
Thhalv10016271m.g Eutrema salsugineum HOM05D004510 ORTHO05D005302 2.0e-07 59.7 38 81.6
Sc21g0007070 Simmondsia chinensis HOM05D004510 ORTHO05D005302 2.0e-07 59.7 38 78.9
THA.LOC104826427 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 2.0e-07 59.7 38 81.6
CANSAT54G0764 Cannabis sativa HOM05D004510 ORTHO05D005302 2.6e-07 59.3 37 78.4
Lsat_1_v5_gn_0_27160 Lactuca sativa HOM05D002313 ORTHO05D026752 2.6e-07 59.3 69 50.7
EL10Ac7g15829 Beta vulgaris HOM05D004510 ORTHO05D005302 3.4e-07 58.9 42 71.4
Migut.N02488 Erythranthe guttata HOM05D004510 ORTHO05D005302 3.4e-07 58.9 38 84.2
SalBow3G0413 Salvia bowleyana HOM05D004510 ORTHO05D005302 3.4e-07 58.9 38 84.2
Sed0027037 Sechium edule HOM05D004510 ORTHO05D005302 3.4e-07 58.9 38 81.6
SGA_v2.0_scaffold295G47522 Striga asiatica HOM05D004510 ORTHO05D005302 3.4e-07 58.9 36 83.3
Actinidia24221 Actinidia chinensis HOM05D004510 ORTHO05D005302 4.4e-07 58.5 38 78.9
AUR62009750 Chenopodium quinoa HOM05D004510 ORTHO05D005302 4.4e-07 58.5 38 76.3
AUR62036195 Chenopodium quinoa HOM05D004510 ORTHO05D005302 4.4e-07 58.5 38 76.3
FAN21G2427 Fragaria x ananassa HOM05D004510 ORTHO05D005302 4.4e-07 58.5 35 85.7
Gohir.A08G005400 Gossypium hirsutum HOM05D004510 ORTHO05D005302 4.4e-07 58.5 38 78.9
Gohir.D08G015800 Gossypium hirsutum HOM05D004510 ORTHO05D005302 4.4e-07 58.5 38 78.9
Gorai.004G010100 Gossypium raimondii HOM05D004510 ORTHO05D005302 4.4e-07 58.5 38 78.9
Nitab4.5_0012235g0010 Nicotiana tabacum HOM05D004510 ORTHO05D005302 4.4e-07 58.5 36 83.3
RcHm_v2.0_Chr5g0044841 Rosa chinensis HOM05D004510 ORTHO05D005302 4.4e-07 58.5 35 85.7
Solyc11g068500.2 Solanum lycopersicum HOM05D004510 ORTHO05D005302 4.4e-07 58.5 36 83.3
Sopen11g027210 Solanum pennellii HOM05D004510 ORTHO05D005302 4.4e-07 58.5 36 83.3
THA.LOC104819420 Tarenaya hassleriana HOM05D002313 ORTHO05D003747 4.4e-07 58.5 70 48.6
Lsat_1_v5_gn_5_110861 Lactuca sativa HOM05D002313 ORTHO05D004520 5.8e-07 58.2 40 72.5
arahy.Tifrunner.gnm1.ann1.039TZW Arachis hypogaea HOM05D002313 ORTHO05D003747 7.5e-07 57.8 43 62.8
arahy.Tifrunner.gnm1.ann1.W6YZV5 Arachis hypogaea HOM05D002313 ORTHO05D003747 7.5e-07 57.8 43 62.8
Cpa.g.sc32.21 Carica papaya HOM05D004510 ORTHO05D005302 7.5e-07 57.8 32 93.8
Ca_19411_v3 Cicer arietinum L. HOM05D004510 ORTHO05D005302 7.5e-07 57.8 37 81.1
Eucgr.B03845 Eucalyptus grandis HOM05D004510 ORTHO05D005302 7.5e-07 57.8 35 82.9
ATR0776G017 Amborella trichopoda HOM05D004510 ORTHO05D005302 9.8e-07 57.4 36 86.1
CAN.G1524.4 Capsicum annuum HOM05D004510 ORTHO05D005302 9.8e-07 57.4 36 80.6
FAN11G3425 Fragaria x ananassa HOM05D004510 ORTHO05D005302 9.8e-07 57.4 35 82.9
MD11G1164800 Malus domestica HOM05D004510 ORTHO05D005302 9.8e-07 57.4 35 82.9
Peaxi162Scf00040g00020 Petunia axillaris HOM05D004510 ORTHO05D005302 9.8e-07 57.4 36 80.6
Psat7g187800 Pisum sativum HOM05D004510 ORTHO05D005302 9.8e-07 57.4 37 78.4
Prupe.6G130700 Prunus persica HOM05D004510 ORTHO05D005302 9.8e-07 57.4 35 82.9
Glyma.11G182800 Glycine max HOM05D004510 ORTHO05D005302 1.3e-06 57.0 37 78.4
Gohir.A03G055400 Gossypium hirsutum HOM05D002313 ORTHO05D003747 1.3e-06 57.0 70 45.7
Gorai.003G117700 Gossypium raimondii HOM05D002313 ORTHO05D003747 1.3e-06 57.0 70 45.7
Actinidia08918 Actinidia chinensis HOM05D002313 ORTHO05D003747 1.7e-06 56.6 88 38.6
Migut.D01169 Erythranthe guttata HOM05D002313 ORTHO05D003747 1.7e-06 56.6 43 62.8
Gohir.A05G080300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.7e-06 56.6 38 73.7
THA.LOC104818290 Tarenaya hassleriana HOM05D002313 ORTHO05D003747 1.7e-06 56.6 70 47.1
Duzib084G0519 Durio zibethinus HOM05D002313 ORTHO05D003747 2.2e-06 56.2 70 45.7
Duzib205G0651 Durio zibethinus HOM05D002313 ORTHO05D003747 2.2e-06 56.2 70 45.7
Lj3g0009034 Lotus japonicus HOM05D004510 ORTHO05D005302 2.2e-06 56.2 40 77.5
SGA_v2.0_scaffold74G24624 Striga asiatica HOM05D002313 ORTHO05D003747 2.2e-06 56.2 70 47.1
Thecc.03G143000 Theobroma cacao HOM05D002313 ORTHO05D003747 2.2e-06 56.2 70 45.7
Actinidia25503 Actinidia chinensis HOM05D002313 ORTHO05D003747 2.9e-06 55.8 81 45.7
Os05g0443300 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 2.9e-06 55.8 34 82.4
Ah.08g215670 Amaranthus hybridus HOM05D004510 ORTHO05D005302 3.7e-06 55.5 36 77.8
Duzib150G0176 Durio zibethinus HOM05D004510 ORTHO05D005302 3.7e-06 55.5 38 73.7
Gohir.D03G111200 Gossypium hirsutum HOM05D002313 ORTHO05D003747 3.7e-06 55.5 70 44.3
Nitab4.5_0002540g0070 Nicotiana tabacum HOM05D002313 ORTHO05D003747 3.7e-06 55.5 43 60.5
Nitab4.5_0004781g0060 Nicotiana tabacum HOM05D002313 ORTHO05D003747 3.7e-06 55.5 43 60.5
Peaxi162Scf00835g00334 Petunia axillaris HOM05D002313 ORTHO05D003747 3.7e-06 55.5 43 62.8
Rhsim08G0199800 Rhododendron simsii HOM05D002313 ORTHO05D003747 3.7e-06 55.5 75 44.0
THA.LOC104801730 Tarenaya hassleriana HOM05D002313 ORTHO05D003747 3.7e-06 55.5 70 45.7
TPR.G17233 Trifolium pratense HOM05D004510 ORTHO05D005302 3.7e-06 55.5 37 75.7
HPP92_011904 Vanilla planifolia HOM05D004510 ORTHO05D005302 3.7e-06 55.5 32 87.5
Zm00001eb288910 Zea mays HOM05D004510 ORTHO05D005302 3.7e-06 55.5 40 70.0
Ca_17048_v3 Cicer arietinum L. HOM05D002313 ORTHO05D003747 4.9e-06 55.1 43 58.1
Gohir.A12G194700 Gossypium hirsutum HOM05D002313 ORTHO05D003747 4.9e-06 55.1 70 44.3
MBI07_g42015_MAGBIO Magnolia biondii HOM05D002313 ORTHO05D003747 4.9e-06 55.1 70 45.7
SalBow1G2272 Salvia bowleyana HOM05D002313 ORTHO05D003747 4.9e-06 55.1 43 60.5
Zm00001eb348320 Zea mays HOM05D004510 ORTHO05D005302 4.9e-06 55.1 41 75.6
CSS0049140 Camellia sinensis var. sinensis HOM05D002313 ORTHO05D003747 6.4e-06 54.7 43 55.8
Glyma.05G199100 Glycine max HOM05D002313 ORTHO05D003747 6.4e-06 54.7 43 58.1
Glyma.08G006400 Glycine max HOM05D002313 ORTHO05D003747 6.4e-06 54.7 43 58.1
Gohir.D05G083300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 6.4e-06 54.7 33 81.8
MBI11_g17277_MAGBIO Magnolia biondii HOM05D002313 ORTHO05D003747 6.4e-06 54.7 70 45.7
Phvul.002G280100 Phaseolus vulgaris HOM05D002313 ORTHO05D003747 6.4e-06 54.7 43 58.1
QL10p000004 Quercus lobata HOM05D002313 ORTHO05D003747 6.4e-06 54.7 70 44.3
QL10p000189 Quercus lobata HOM05D002313 ORTHO05D003747 6.4e-06 54.7 70 44.3
Dinv23243 Davidia involucrata HOM05D002313 ORTHO05D003747 8.3e-06 54.3 43 58.1
Lalb_Chr19g0136431 Lupinus albus HOM05D004510 ORTHO05D005302 8.3e-06 54.3 32 87.5
Peaxi162Scf00314g00724 Petunia axillaris HOM05D002313 ORTHO05D003747 8.3e-06 54.3 43 60.5
Phvul.011G094800 Phaseolus vulgaris HOM05D004510 ORTHO05D005302 8.3e-06 54.3 37 75.7
VMungo0251G2525 Vigna mungo HOM05D002313 ORTHO05D003747 8.3e-06 54.3 43 58.1


User provided reference genes

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