Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 2.4e-306 1054.7 519 100.0
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 7.1e-279 963.4 520 92.1
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 1.5e-276 955.7 517 91.1
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 4.5e-265 917.5 519 86.9
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 4.2e-263 911.0 521 86.2
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 1.2e-262 909.4 525 85.1
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 4.6e-262 907.5 520 86.5
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 6.1e-262 907.1 499 88.4
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.8e-261 905.6 521 86.4
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 8.8e-261 903.3 519 85.7
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 1.1e-260 902.9 519 85.0
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.5e-260 902.5 521 86.0
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 1.5e-260 902.5 520 85.6
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 7.4e-260 900.2 521 85.8
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 9.7e-260 899.8 515 85.6
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 9.7e-260 899.8 515 85.6
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 1.3e-259 899.4 499 87.8
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 2.8e-259 898.3 526 84.4
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 3.7e-259 897.9 527 84.3
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 3.7e-259 897.9 504 87.3
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 3.7e-259 897.9 519 85.4
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 3.7e-259 897.9 521 85.2
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 4.8e-259 897.5 528 84.1
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.1e-258 896.3 519 85.0
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.1e-258 896.3 501 87.4
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 2.4e-258 895.2 522 85.1
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 5.3e-258 894.0 521 85.4
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 6.9e-258 893.6 519 85.0
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 6.9e-258 893.6 501 86.6
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 9.1e-258 893.3 518 84.6
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 9.1e-258 893.3 499 87.2
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 1.2e-257 892.9 504 86.5
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 1.2e-257 892.9 504 86.5
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 1.2e-257 892.9 525 83.6
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 1.2e-257 892.9 521 84.6
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.2e-257 892.9 521 84.6
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 2.0e-257 892.1 499 87.0
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 2.6e-257 891.7 499 87.2
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 2.6e-257 891.7 499 87.2
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 3.4e-257 891.3 501 87.2
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 3.4e-257 891.3 499 86.8
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 4.5e-257 891.0 521 84.5
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 5.9e-257 890.6 522 82.8
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 7.7e-257 890.2 518 83.6
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.0e-256 889.8 525 84.0
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 1.3e-256 889.4 504 86.5
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 1.7e-256 889.0 519 84.6
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 2.9e-256 888.3 501 86.6
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 3.8e-256 887.9 504 86.3
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 3.8e-256 887.9 504 86.3
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 5.0e-256 887.5 516 83.7
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 5.0e-256 887.5 521 84.5
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 6.5e-256 887.1 538 82.0
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 8.5e-256 886.7 524 84.0
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.1e-255 886.3 501 86.4
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.1e-255 886.3 518 84.7
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.1e-255 886.3 519 84.2
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.4e-255 885.9 517 83.6
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.4e-255 885.9 519 84.4
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.9e-255 885.6 521 84.1
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 4.2e-255 884.4 526 82.9
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 5.5e-255 884.0 523 84.1
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 7.2e-255 883.6 519 84.6
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 9.4e-255 883.2 502 85.9
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 9.4e-255 883.2 501 86.4
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.2e-254 882.9 499 86.8
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 1.2e-254 882.9 501 85.6
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 2.1e-254 882.1 522 82.6
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 2.7e-254 881.7 522 83.7
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 3.6e-254 881.3 503 85.5
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 4.7e-254 880.9 502 85.7
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 7.9e-254 880.2 501 84.6
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.0e-253 879.8 524 82.1
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.0e-253 879.8 510 84.3
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.4e-253 879.4 510 84.7
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.8e-253 879.0 500 85.8
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 8.8e-253 876.7 525 81.9
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.1e-252 876.3 491 87.4
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.5e-252 875.9 493 87.2
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.5e-252 875.9 520 82.9
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.5e-252 875.9 520 82.9
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 3.3e-252 874.8 522 82.0
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 5.7e-252 874.0 507 84.2
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 5.7e-252 874.0 546 78.9
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 5.7e-252 874.0 520 82.7
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 2.2e-251 872.1 554 79.8
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 2.2e-251 872.1 501 84.6
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 2.8e-251 871.7 503 83.5
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 2.8e-251 871.7 504 83.7
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 3.1e-250 868.2 493 86.6
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 7.0e-250 867.1 500 84.6
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.5e-249 864.8 515 81.9
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 5.9e-249 864.0 520 81.9
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.0e-248 863.2 530 80.4
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.3e-248 862.8 525 80.8
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 6.5e-248 860.5 522 81.6
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.1e-247 859.8 524 80.2
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 1.9e-247 859.0 529 80.5
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 5.5e-247 857.4 522 81.0
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 1.1e-244 849.7 501 80.8
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.5e-244 849.4 520 80.8
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.5e-244 849.4 520 80.8
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 8.2e-243 843.6 500 80.6
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 4.1e-242 841.3 510 80.4
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 2.7e-238 828.6 528 75.2
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 2.8e-235 818.5 515 79.8
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 1.2e-233 813.1 493 80.3
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 5.5e-231 804.3 528 73.7
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 9.8e-228 793.5 521 74.1
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 8.3e-227 790.4 538 73.6
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 2.4e-226 788.9 521 74.7
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 6.1e-222 774.2 506 73.3
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.0e-220 769.2 499 73.9
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.4e-218 763.1 525 69.7
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.0e-216 756.9 473 81.6
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.9e-216 755.0 502 70.9
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 4.3e-215 751.5 532 67.5
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 2.0e-212 742.7 495 70.1
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 1.6e-209 733.0 520 69.2
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 2.7e-209 732.3 411 87.3
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.7e-208 729.6 524 73.3
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 3.4e-204 715.3 525 72.0
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 2.7e-201 705.7 491 67.6
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 6.6e-200 701.0 397 88.4
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 9.2e-194 680.6 522 68.6
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 5.8e-188 661.4 540 60.2
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 1.2e-185 653.7 379 85.8
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 9.9e-180 634.0 501 62.7
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 3.4e-172 609.0 419 75.2
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 5.5e-170 601.7 346 86.7
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 1.1e-167 594.0 344 85.8
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 1.3e-155 553.9 491 54.6
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 2.5e-151 539.7 499 57.7
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.3e-150 537.3 355 77.7
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 6.7e-144 515.0 287 85.4
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 6.7e-144 515.0 290 85.2
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 9.4e-138 494.6 360 72.5
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 8.2e-134 481.5 276 87.3
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 8.5e-131 471.5 510 49.0
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 7.5e-127 458.4 502 49.0
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 2.6e-119 433.3 285 78.9
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 2.0e-92 344.0 192 85.4
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 5.2e-80 302.8 411 39.2
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 1.3e-65 255.0 325 46.8
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 6.9e-64 249.2 413 41.4
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.7e-44 184.1 122 74.6
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 3.4e-39 167.2 93 84.9
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 3.0e-27 127.5 95 67.4
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 1.3e-25 122.1 79 74.7
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.4e-19 102.1 68 67.6
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 3.7e-17 94.0 76 64.5
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 2.9e-14 84.3 125 44.0
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 2.3e-11 74.7 72 58.3
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 6.7e-11 73.2 48 66.7
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 9.1e-08 62.8 35 80.0


User provided reference genes

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