Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 2758.4 1396 100.0
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1538.1 1311 65.2
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1505.0 1314 62.9
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1350.5 1332 57.2
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1325.8 1331 55.6
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1317.4 1361 54.5
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1279.6 1333 55.2
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1275.8 1323 54.4
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1264.2 1303 55.5
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1262.7 1323 54.6
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1262.3 1325 54.9
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1259.2 1330 54.0
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1256.5 1433 51.6
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1243.4 1321 54.2
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1235.7 1297 53.5
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1225.3 1316 53.6
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1222.2 1314 53.3
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1219.9 1315 53.6
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1213.0 1327 51.9
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1206.0 1297 54.3
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1203.7 1346 51.1
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1190.3 1327 52.4
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1189.9 1392 49.7
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1179.5 1348 51.3
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1177.9 1307 52.0
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1176.4 1306 53.0
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1172.5 1323 54.2
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1172.1 1309 52.6
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1167.5 1406 50.2
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1161.4 1347 49.6
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1159.8 1303 51.7
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1153.3 1459 48.2
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1142.1 1307 50.7
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1141.7 1298 50.8
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1135.6 1292 50.4
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1131.7 1373 49.5
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1128.2 1301 50.1
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1128.2 1352 49.3
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1114.8 1301 50.6
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1105.5 1339 49.2
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1104.7 1288 49.9
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1104.4 1337 48.6
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1104.0 1318 49.6
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1095.5 1318 49.8
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1095.1 1299 49.9
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1093.6 1307 48.6
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1093.6 1367 47.9
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1093.2 1298 49.5
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1091.3 1301 49.4
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1090.9 1298 50.1
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1087.4 1307 49.3
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1081.6 1312 48.9
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1081.2 1313 48.5
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1078.9 1324 48.6
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 9.5e-312 1073.5 1305 48.4
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 1.4e-310 1070.1 1307 48.5
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 3.6e-309 1065.4 1356 46.8
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.2e-307 1060.4 1303 48.0
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 9.8e-307 1057.4 1341 47.1
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 8.3e-306 1054.3 1331 47.5
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 1.1e-305 1053.9 1335 48.3
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 2.4e-305 1052.7 1311 47.5
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 3.1e-305 1052.4 1311 47.7
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 3.1e-305 1052.4 1317 48.7
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 7.0e-305 1051.2 1051 54.8
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 2.0e-304 1049.7 1326 47.9
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 1.1e-302 1043.9 1322 48.1
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 1.5e-302 1043.5 1310 47.3
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 2.5e-302 1042.7 1341 46.8
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 3.2e-302 1042.3 1295 48.9
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 9.5e-302 1040.8 1319 47.8
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 2.1e-301 1039.6 1342 46.6
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 6.1e-301 1038.1 1321 47.9
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 6.1e-301 1038.1 1321 47.9
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 6.1e-301 1038.1 1321 47.9
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 3.0e-300 1035.8 1375 46.6
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 1.5e-299 1033.5 1293 47.2
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 1.5e-299 1033.5 1297 47.5
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 2.6e-299 1032.7 1325 47.1
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 2.2e-298 1029.6 1302 46.5
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 1.4e-297 1026.9 1302 47.2
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 1.6e-296 1023.5 1298 48.1
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 4.3e-294 1015.4 1303 47.0
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 1.5e-283 980.3 1305 45.6
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 1.0e-279 967.6 1338 46.1
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 3.9e-279 965.7 1350 46.7
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 2.3e-276 956.4 1082 49.6
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 3.4e-275 952.6 1299 45.7
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 4.9e-274 948.7 1303 44.4
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 1.9e-273 946.8 1328 44.8
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.5e-270 937.2 1312 43.1
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 2.9e-266 922.9 1296 43.5
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 3.8e-258 896.0 1243 45.0
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 1.9e-257 893.6 926 55.7
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 2.1e-253 880.2 1286 44.2
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 5.8e-235 818.9 841 54.2
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 1.2e-203 714.9 703 57.2
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 1.5e-198 698.0 751 53.9
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 6.1e-192 676.0 635 59.2
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.5e-182 644.8 712 51.4
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 1.8e-180 637.9 881 47.0
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 2.0e-166 591.3 478 64.0
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 5.4e-164 583.2 812 44.8
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 9.9e-158 562.4 1275 31.9
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 2.2e-149 534.6 862 41.3
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 3.9e-146 523.9 682 43.1
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 6.2e-144 516.5 770 44.0
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 2.9e-141 507.7 356 72.8
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 2.9e-141 507.7 1276 30.0
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 1.6e-136 491.9 675 44.4
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 1.1e-132 479.2 1062 34.4
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 5.1e-130 470.3 356 64.3
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 8.1e-128 463.0 383 61.9
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 2.4e-127 461.5 1141 31.7
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 8.7e-122 443.0 568 46.1
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 6.5e-117 426.8 1195 29.9
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.3e-114 419.1 411 49.6
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 8.8e-98 363.2 480 47.7
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 1.5e-97 362.5 439 44.9
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.5e-81 309.3 325 46.5
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.0e-69 270.0 351 45.6
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.1e-63 250.0 436 37.2
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 8.6e-61 240.4 235 51.9
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.2e-49 203.4 337 37.7
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 9.8e-49 200.3 283 42.8
ECA240G2546 Erigeron canadensis HOM05D003069 ORTHO05D002578 3.2e-47 195.3 127 75.6
ECA240G3936 Erigeron canadensis HOM05D003069 ORTHO05D002578 1.3e-45 189.9 125 74.4
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 6.6e-45 187.6 264 43.2
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 7.3e-44 184.1 121 71.9
ECA246G3005 Erigeron canadensis HOM05D003069 ORTHO05D002578 2.1e-43 182.6 129 68.2
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 4.9e-40 171.4 359 36.5
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 1.1e-34 153.7 531 26.2
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.1e-34 153.7 164 53.0
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.4e-31 143.3 199 48.7
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 1.7e-29 136.3 372 27.7
ECA247G4109 Erigeron canadensis HOM05D000047 ORTHO05D000044 1.1e-28 133.7 127 57.5
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 3.1e-26 125.6 249 37.3
ECA248G2001 Erigeron canadensis HOM05D003069 ORTHO05D002578 3.8e-24 118.6 129 52.7
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 1.2e-22 113.6 271 29.2
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 2.1e-19 102.8 94 56.4
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.1e-18 100.5 137 43.8
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.5e-17 96.7 267 31.1
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 2.4e-15 89.4 310 28.4
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 3.3e-12 79.0 398 22.4
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 3.7e-11 75.5 176 35.8
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 6.5e-08 64.7 90 41.1
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 8.4e-08 64.3 83 44.6
ECA247G3433 Erigeron canadensis HOM05D000047 ORTHO05D002578 1.4e-07 63.5 130 40.8
ECA246G1565 Erigeron canadensis HOM05D000047 ORTHO05D000044 7.1e-07 61.2 119 42.0
TAR625G0866 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.2e-06 60.5 43 67.4
ECA234G3473 Erigeron canadensis HOM05D000047 ORTHO05D000044 2.7e-06 59.3 101 41.6
ECA232G2989 Erigeron canadensis HOM05D000047 ORTHO05D000044 3.5e-06 58.9 127 37.8
ECA234G4016 Erigeron canadensis HOM05D000047 ORTHO05D000044 3.5e-06 58.9 93 41.9
ECA232G4995 Erigeron canadensis HOM05D003069 ORTHO05D002578 7.9e-06 57.8 91 46.2


User provided reference genes

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