Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 0.0e+00 1313.1 685 100.0
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 2.5e-183 646.4 696 52.3
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 5.2e-160 568.9 739 47.0
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 2.3e-152 543.5 738 45.1
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 8.3e-150 535.0 746 45.2
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 1.3e-134 484.6 825 38.8
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 4.6e-132 476.1 789 40.7
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 6.6e-131 472.2 822 39.3
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.4e-128 464.5 808 38.4
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.3e-126 458.0 720 41.7
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.4e-125 453.8 795 38.6
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 3.6e-121 439.9 797 37.8
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 4.7e-121 439.5 803 37.0
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 5.8e-119 432.6 800 37.4
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 6.4e-118 429.1 819 36.8
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 5.4e-117 426.0 821 35.6
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 7.1e-117 425.6 815 37.2
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 7.8e-116 422.2 794 35.6
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 2.5e-114 417.2 771 38.4
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 2.1e-113 414.1 770 35.8
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 3.6e-113 413.3 800 35.6
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 8.1e-113 412.1 829 34.0
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 4.0e-112 409.8 840 34.3
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 6.8e-112 409.1 737 36.5
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.2e-111 408.3 810 36.5
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.2e-111 408.3 785 34.6
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 2.0e-111 407.5 808 35.0
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 3.4e-111 406.8 810 36.4
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.1e-109 401.7 809 35.5
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.9e-109 401.0 795 35.5
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 7.1e-109 399.1 817 34.6
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 2.1e-108 397.5 784 36.1
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 4.6e-108 396.4 803 34.9
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 4.6e-108 396.4 810 34.8
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 7.8e-108 395.6 824 34.2
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 6.6e-107 392.5 824 34.8
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 6.6e-107 392.5 820 34.8
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.1e-106 391.7 804 35.7
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 1.5e-106 391.3 820 33.9
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 1.9e-106 391.0 799 35.7
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 7.3e-106 389.0 781 33.5
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 9.6e-106 388.7 788 35.0
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 9.6e-106 388.7 794 35.8
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 2.8e-105 387.1 780 35.0
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 3.6e-105 386.7 811 35.0
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.8e-104 384.4 821 34.0
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 2.4e-104 384.0 824 35.1
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 2.4e-104 384.0 816 35.4
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 3.1e-104 383.6 805 34.4
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.2e-103 381.7 822 34.7
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.0e-103 380.9 838 33.3
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.8e-103 379.4 810 33.5
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 7.6e-103 379.0 823 34.3
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 9.9e-103 378.6 794 34.5
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 9.9e-103 378.6 766 34.1
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.7e-102 377.9 820 33.8
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 4.9e-102 376.3 804 33.8
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 5.4e-101 372.9 816 32.7
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 1.2e-100 371.7 894 33.2
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 3.5e-100 370.2 825 34.2
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 7.8e-100 369.0 827 33.4
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.3e-99 368.2 810 34.4
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 6.6e-99 365.9 819 33.2
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.5e-98 364.8 770 33.1
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 3.3e-98 363.6 805 32.8
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.9e-96 355.9 849 32.0
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 2.6e-95 354.0 794 33.5
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 9.9e-95 352.1 805 32.5
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 6.4e-94 349.4 836 31.5
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.6e-92 344.7 819 31.6
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.7e-92 344.0 822 31.1
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 4.6e-92 343.2 938 30.0
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 3.0e-91 340.5 786 32.4
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 4.3e-90 336.7 967 30.0
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 1.1e-88 332.0 861 31.9
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 9.0e-88 328.9 805 32.2
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 2.6e-87 327.4 993 28.8
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 1.1e-85 322.0 887 30.3
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.4e-85 321.6 489 38.7
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 3.2e-85 320.5 801 30.5
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 4.2e-85 320.1 1027 29.3
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 2.7e-84 317.4 779 30.8
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.7e-84 317.4 929 29.0
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.7e-84 317.4 754 33.2
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 7.9e-84 315.8 694 35.0
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 1.3e-83 315.1 777 32.3
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 1.8e-83 314.7 805 30.9
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.3e-81 308.5 720 33.9
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.0e-78 298.9 813 31.0
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 2.9e-78 297.4 740 31.9
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 3.8e-78 297.0 794 30.5
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 6.1e-76 289.7 665 30.5
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 3.0e-75 287.3 770 30.8
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 2.5e-74 284.3 825 28.7
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 5.7e-74 283.1 976 27.7
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 3.7e-73 280.4 656 32.5
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 2.5e-66 257.7 431 36.9
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 3.3e-66 257.3 454 35.9
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 5.7e-66 256.5 706 29.9
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 1.5e-63 248.4 450 33.8
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 3.2e-61 240.7 444 39.2
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 7.9e-60 236.1 846 27.3
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.9e-59 233.8 445 37.5
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 1.3e-57 228.8 743 25.7
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 4.8e-57 226.9 418 34.2
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 6.3e-57 226.5 429 35.7
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.8e-56 224.9 443 36.1
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 2.4e-56 224.6 430 34.9
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 9.1e-56 222.6 681 30.4
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.7e-54 218.4 424 35.4
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.8e-54 217.2 433 36.0
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 7.2e-53 213.0 413 34.4
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 3.6e-52 210.7 415 35.2
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.6e-52 210.7 519 32.0
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.8e-51 208.4 419 34.1
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 3.3e-50 204.1 414 35.5
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.4e-50 203.8 418 33.3
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 2.8e-49 201.1 429 34.5
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.8e-48 198.4 417 33.8
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 2.4e-48 198.0 418 33.7
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.4e-48 198.0 766 27.0
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 1.2e-47 195.7 415 33.5
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.2e-47 195.7 413 32.7
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 2.0e-47 194.9 408 33.6
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.0e-47 194.9 407 32.9
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.6e-47 194.5 760 25.1
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 7.7e-47 193.0 417 32.1
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 2.9e-46 191.0 384 33.9
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 6.5e-46 189.9 411 33.1
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 6.5e-46 189.9 411 33.1
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 8.5e-46 189.5 408 34.3
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 2.5e-45 188.0 384 33.9
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.5e-45 188.0 363 35.3
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 3.6e-44 184.1 347 35.7
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.8e-43 181.8 242 42.1
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.7e-41 175.3 859 25.0
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 4.1e-40 170.6 688 27.9
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 2.9e-38 164.5 419 32.9
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.1e-36 158.3 339 34.5
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 2.3e-35 154.8 572 27.4
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 1.7e-33 148.7 737 22.8
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 8.3e-33 146.4 420 30.2
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 9.1e-32 142.9 465 26.5
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 3.5e-31 141.0 681 21.7
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 1.7e-30 138.7 105 60.0
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.6e-28 132.1 100 58.0
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 9.2e-24 116.3 607 22.9
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 2.1e-20 105.1 213 31.0
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.1e-20 105.1 120 46.7
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 1.5e-18 99.0 263 33.5
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 1.7e-17 95.5 158 39.2
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 3.2e-16 91.3 269 32.3
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 5.4e-16 90.5 153 36.6
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.3e-11 75.1 79 39.2
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 8.3e-09 66.6 322 22.7
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.1e-08 66.2 66 47.0
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.9e-08 65.5 194 30.9
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.1e-07 62.0 84 36.9
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 1.3e-06 59.3 50 56.0
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 3.9e-06 57.8 82 42.7


User provided reference genes

Program Settings