Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 0.0e+00 1833.2 924 100.0
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 0.0e+00 1286.9 915 73.1
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 0.0e+00 1266.9 916 72.3
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 0.0e+00 1194.9 897 70.5
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 1.5e-274 949.9 951 55.9
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 1.8e-272 943.0 939 55.5
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 1.7e-270 936.4 918 55.8
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 3.7e-270 935.3 919 55.8
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 2.4e-269 932.6 937 55.5
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 2.0e-268 929.5 945 54.8
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 2.2e-267 926.0 919 56.8
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 3.4e-263 912.1 946 53.7
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 4.4e-263 911.8 933 53.9
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 1.3e-262 910.2 912 55.6
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 8.3e-262 907.5 954 54.5
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 1.2e-260 903.7 970 52.4
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 2.3e-259 899.4 933 53.6
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 8.6e-259 897.5 926 54.0
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 4.2e-258 895.2 921 53.4
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 6.1e-257 891.3 909 56.9
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 1.0e-256 890.6 925 53.5
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 1.4e-256 890.2 925 53.1
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 3.0e-256 889.0 946 52.7
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 2.6e-255 885.9 925 53.9
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 7.5e-255 884.4 941 52.6
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 9.8e-255 884.0 771 59.0
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 2.2e-254 882.9 943 52.7
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.5e-252 875.5 951 53.4
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 5.9e-252 874.8 935 53.6
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 1.0e-251 874.0 956 51.8
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.3e-251 873.6 952 53.5
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 2.3e-251 872.8 954 51.4
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.3e-251 872.8 951 53.3
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 2.9e-251 872.5 957 53.3
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 3.8e-251 872.1 953 53.2
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 6.6e-251 871.3 914 53.6
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 4.3e-250 868.6 951 51.8
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 9.5e-250 867.5 951 52.7
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 8.0e-249 864.4 933 53.2
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 1.0e-248 864.0 952 52.3
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.4e-248 863.6 952 51.9
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 5.8e-247 858.2 946 51.8
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 7.5e-247 857.8 945 51.9
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 9.8e-247 857.4 939 52.8
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 2.2e-246 856.3 947 50.8
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 3.7e-246 855.5 950 51.7
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.4e-245 853.6 925 52.2
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 2.4e-245 852.8 902 53.5
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 5.4e-245 851.7 927 51.3
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 7.0e-245 851.3 967 50.2
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 9.2e-245 850.9 960 51.6
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 2.0e-244 849.7 907 52.9
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 6.0e-244 848.2 940 50.9
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.0e-243 847.4 958 51.9
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 3.9e-243 845.5 918 52.1
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 5.0e-243 845.1 930 52.5
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 5.0e-243 845.1 928 51.1
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 8.6e-243 844.3 939 51.3
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 8.6e-243 844.3 920 52.5
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 4.3e-242 842.0 970 51.0
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 5.6e-242 841.6 950 51.6
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 7.3e-242 841.3 944 52.0
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 6.2e-241 838.2 917 50.8
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 6.8e-240 834.7 963 50.7
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 8.9e-240 834.3 903 51.9
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 1.3e-238 830.5 899 51.9
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 2.9e-238 829.3 917 51.0
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 1.1e-237 827.4 663 63.2
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 2.7e-236 822.8 938 51.4
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 1.3e-235 820.5 948 50.7
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 1.3e-235 820.5 948 50.7
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 2.3e-235 819.7 924 51.1
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 3.9e-235 818.9 897 52.3
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 6.6e-235 818.1 877 52.9
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 7.3e-234 814.7 916 51.0
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 2.8e-233 812.8 874 51.9
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 3.6e-233 812.4 686 60.8
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 1.1e-232 810.8 955 50.7
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 1.5e-231 807.0 985 48.3
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 3.4e-231 805.8 894 51.0
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 2.9e-230 802.7 895 49.9
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.7e-230 802.4 983 48.7
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 4.9e-230 802.0 920 50.0
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 4.9e-230 802.0 684 61.4
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 9.2e-229 797.7 947 50.4
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 5.1e-227 792.0 907 49.8
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.1e-226 790.8 802 54.5
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 2.5e-226 789.6 890 50.6
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 5.2e-224 781.9 926 48.9
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 3.4e-223 779.2 898 49.9
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 3.2e-221 772.7 943 48.7
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 4.2e-221 772.3 930 48.6
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 7.1e-221 771.5 943 49.2
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.6e-220 768.8 943 49.3
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 4.6e-220 768.8 661 60.2
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 7.8e-220 768.1 944 47.9
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.7e-219 766.9 942 48.9
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 3.9e-219 765.8 670 59.4
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.9e-214 749.6 814 52.2
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 5.8e-207 725.3 913 47.2
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 9.3e-205 718.0 774 54.5
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 3.4e-199 699.5 615 61.8
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.1e-197 694.5 861 47.4
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 2.9e-190 669.8 896 45.8
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 4.2e-189 666.0 925 42.3
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 7.4e-186 655.2 906 45.0
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 2.2e-185 653.7 673 51.1
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 2.7e-180 636.7 805 45.3
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.5e-173 612.5 714 51.1
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 2.3e-171 607.1 458 69.4
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 3.5e-159 566.6 424 67.2
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 5.0e-158 562.8 703 44.8
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 4.2e-157 559.7 612 49.7
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 1.9e-149 534.3 673 47.3
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 4.9e-145 519.6 563 51.3
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.7e-142 511.1 665 45.4
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 5.0e-142 509.6 629 46.6
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 3.3e-141 506.9 786 41.1
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 4.2e-141 506.5 557 48.1
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.7e-138 496.1 658 46.8
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 4.7e-124 449.9 671 41.3
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.8e-123 448.0 699 42.9
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 1.9e-109 401.4 689 37.0
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 1.2e-98 365.5 252 74.6
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 1.3e-94 352.1 493 43.2
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 9.6e-93 345.9 496 43.1
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 6.9e-91 339.7 286 62.2
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 3.4e-90 337.4 269 63.2
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 2.1e-84 318.2 516 40.5
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 4.5e-82 310.5 415 45.5
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.8e-78 298.5 195 74.4
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 1.4e-72 278.9 215 66.5
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 3.1e-67 261.2 242 56.6
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.6e-63 248.8 173 70.5
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 5.3e-59 233.8 230 52.2
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.5e-50 204.1 132 75.8
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 3.8e-49 201.1 160 63.8
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.5e-48 199.1 160 65.0
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 5.2e-46 190.7 277 42.6
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 3.5e-42 177.9 309 40.5
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 1.2e-39 169.5 173 49.1
ECA240G1112 Erigeron canadensis HOM05D004501 ORTHO05D004944 8.3e-36 156.8 90 88.9
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 5.4e-35 154.1 114 62.3
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 1.3e-28 132.9 209 42.6
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.8e-28 131.7 78 78.2
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 1.6e-26 125.9 528 25.8
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 7.3e-16 90.5 95 47.4
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 1.0e-14 86.7 292 30.1
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.9e-12 77.8 48 75.0
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 1.9e-11 75.9 547 23.0
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 1.7e-09 69.3 271 29.2
Lsat_1_v5_gn_4_145741 Lactuca sativa HOM05D004501 ORTHO05D004944 2.8e-07 62.0 51 66.7
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 2.8e-07 62.0 40 65.0


User provided reference genes

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