Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 5.8e-265 917.5 668 100.0
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 3.8e-232 808.5 668 91.0
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 6.9e-218 761.1 673 88.1
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 4.3e-212 741.9 671 83.9
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 3.9e-197 692.2 671 81.8
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 5.0e-192 675.2 670 80.6
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 8.5e-192 674.5 669 81.2
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 1.0e-189 667.5 671 79.9
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 6.7e-189 664.8 674 79.7
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 6.7e-189 664.8 670 80.0
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 2.9e-184 649.4 663 79.6
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 5.0e-184 648.7 661 78.4
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 7.2e-183 644.8 674 76.0
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 9.4e-183 644.4 659 78.6
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 2.1e-182 643.3 671 78.5
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 6.1e-182 641.7 671 78.1
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 1.0e-181 641.0 672 78.0
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.8e-181 640.2 669 78.9
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 8.8e-181 637.9 665 77.6
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 1.2e-180 637.5 669 78.2
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 1.2e-180 637.5 669 78.8
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 8.3e-179 631.3 666 77.5
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 8.3e-179 631.3 665 77.7
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 1.4e-178 630.6 674 77.4
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 1.4e-178 630.6 661 79.1
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 5.4e-178 628.6 683 76.0
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 7.0e-178 628.2 668 77.7
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 7.0e-178 628.2 684 75.9
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 7.0e-178 628.2 660 79.1
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 9.1e-178 627.9 659 78.8
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 1.2e-177 627.5 670 78.2
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 2.0e-177 626.7 660 78.3
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 2.0e-177 626.7 663 78.3
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 2.7e-177 626.3 660 78.9
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 3.5e-177 625.9 676 76.9
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 4.5e-177 625.5 672 76.8
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 4.5e-177 625.5 662 79.6
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 1.7e-176 623.6 458 70.7
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 1.7e-176 623.6 669 77.1
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 2.3e-176 623.2 670 77.0
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 5.0e-176 622.1 657 78.2
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 6.6e-176 621.7 658 74.8
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 8.6e-176 621.3 672 76.8
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 3.3e-175 619.4 663 77.1
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 5.5e-175 618.6 663 77.2
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 1.2e-174 617.5 448 71.0
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 2.1e-174 616.7 666 76.9
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 2.8e-174 616.3 669 77.1
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 4.7e-174 615.5 663 77.5
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 4.7e-174 615.5 663 77.4
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 4.0e-173 612.5 454 69.8
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 8.9e-173 611.3 665 76.7
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.5e-172 610.5 453 69.5
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 4.4e-172 609.0 673 76.7
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 8.3e-171 604.7 457 69.1
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 1.4e-170 604.0 675 75.1
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 3.1e-170 602.8 665 75.3
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 4.1e-170 602.4 470 68.3
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 3.3e-167 592.8 668 75.4
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 4.7e-166 589.0 667 75.4
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.0e-165 587.8 668 75.4
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 2.3e-165 586.6 702 72.9
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 4.4e-164 582.4 666 75.8
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 1.3e-163 580.9 666 75.7
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 2.2e-163 580.1 666 75.4
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 1.4e-162 577.4 665 73.7
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 1.9e-162 577.0 685 73.3
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 4.1e-162 575.9 674 74.3
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 2.7e-161 573.2 666 75.1
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 2.7e-161 573.2 666 75.1
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.3e-160 570.9 671 74.7
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.3e-160 570.9 670 74.9
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 3.9e-160 569.3 666 75.1
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 7.3e-159 565.1 452 66.4
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 6.2e-158 562.0 619 77.9
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 1.8e-157 560.5 665 73.2
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 4.4e-156 555.8 669 73.1
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 6.4e-155 552.0 667 73.9
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 1.4e-154 550.8 668 73.2
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 2.1e-153 547.0 669 72.5
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 1.0e-152 544.7 615 73.0
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 3.0e-152 543.1 669 73.4
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 5.1e-152 542.3 665 72.8
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 6.6e-152 542.0 667 72.9
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 6.6e-152 542.0 668 73.1
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 6.6e-152 542.0 667 69.4
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 1.9e-151 540.4 665 72.8
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 2.5e-151 540.0 455 61.8
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 4.3e-151 539.3 576 53.6
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 4.3e-151 539.3 665 72.0
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.6e-150 537.3 665 61.1
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 2.3e-149 533.5 727 64.2
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 7.5e-148 528.5 668 71.7
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 1.3e-147 527.7 669 71.6
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 4.9e-147 525.8 571 81.3
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 4.9e-147 525.8 604 61.6
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 3.5e-145 519.6 456 61.0
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 4.6e-145 519.2 382 70.2
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 1.1e-143 514.6 457 62.4
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 1.6e-142 510.8 457 59.7
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 2.0e-140 503.8 451 59.2
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 2.0e-140 503.8 568 80.6
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 1.5e-135 487.6 438 61.0
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 1.3e-128 464.5 569 75.0
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 3.8e-123 446.4 669 66.7
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 9.6e-119 431.8 702 63.8
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 2.4e-117 427.2 677 62.6
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 4.9e-115 419.5 354 63.8
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 9.3e-114 415.2 461 50.8
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.6e-113 414.5 632 56.8
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 2.8e-110 403.7 315 69.5
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 1.0e-107 395.2 293 73.4
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 1.3e-104 384.8 403 51.6
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 1.6e-102 377.9 278 70.5
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.3e-83 315.1 667 58.2
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 2.8e-62 244.2 342 45.9
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 5.0e-59 233.4 462 32.3
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 5.0e-59 233.4 193 64.8
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 2.9e-54 217.6 147 72.8
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 2.4e-53 214.5 467 31.9
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 1.3e-51 208.8 276 51.1
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 3.3e-50 204.1 162 60.5
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 6.1e-49 199.9 567 46.9
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 4.0e-48 197.2 190 49.5
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 7.5e-47 193.0 147 68.0
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 9.8e-47 192.6 523 28.9
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 4.1e-45 187.2 142 69.7
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.6e-44 185.3 174 57.5
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 2.1e-41 174.9 235 50.2
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.6e-36 158.7 124 62.1
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 3.5e-36 157.5 289 37.4
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 3.9e-35 154.1 145 51.0
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 1.8e-32 145.2 114 66.7
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 6.4e-30 136.7 150 52.0
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 7.8e-28 129.8 290 88.6
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 3.1e-24 117.9 66 84.8
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 2.1e-20 105.1 516 22.9
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 5.6e-18 97.1 110 48.2
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 7.3e-18 96.7 81 56.8
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 8.1e-17 93.2 280 31.1
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 5.3e-16 90.5 73 58.9
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 6.4e-14 83.6 91 47.3
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 8.4e-14 83.2 489 23.5
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 5.4e-13 80.5 54 77.8
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.6e-12 79.0 53 77.4
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 2.1e-12 78.6 140 37.9
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 8.1e-09 66.6 47 76.6
Dinv40325 Davidia involucrata HOM05D004632 ORTHO05D005556 4.0e-08 64.3 37 78.4
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.6e-07 61.6 51 64.7


User provided reference genes

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