Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 3331.6 1706 100.0
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2650.9 1726 80.2
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2646.3 1720 81.0
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 2365.9 1723 75.0
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2361.3 1797 70.8
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2352.4 1824 68.9
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2340.1 1751 70.4
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2331.6 1817 69.6
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2282.3 1832 68.3
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2280.4 1843 67.9
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2280.4 1875 66.9
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2279.6 1832 67.5
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2269.6 1792 68.0
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2261.5 1833 66.6
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2260.7 1827 67.4
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2256.5 1853 66.9
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2252.6 1837 67.0
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2251.5 1791 67.2
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2249.2 1819 67.2
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2229.9 1817 66.2
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2229.5 1802 66.8
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2228.4 1794 66.7
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2226.1 1816 67.1
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2224.1 1829 66.2
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2221.4 1811 66.8
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2216.8 1830 65.8
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2216.0 1883 64.7
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2215.7 1831 65.9
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2207.9 1728 68.5
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2204.5 1827 66.1
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2202.6 1828 66.1
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2201.4 1866 64.9
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2197.2 1824 66.3
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2196.4 1816 65.7
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2192.9 1814 66.3
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2191.4 1812 66.4
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2187.1 1814 65.7
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2185.6 1814 66.1
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2182.9 1788 65.7
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2174.8 1836 65.5
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2167.9 1813 65.5
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2167.5 1811 65.8
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2164.0 1840 65.2
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2162.9 1821 65.2
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2160.2 1829 64.9
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2158.3 1822 65.1
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2154.4 1810 65.5
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2154.0 1877 63.7
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2148.6 1818 64.9
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2147.1 1839 64.8
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2146.7 1807 65.0
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2146.7 1787 65.7
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2143.6 1780 66.0
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2140.2 1837 64.9
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2139.8 1827 64.4
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2137.1 1819 64.1
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2132.5 1813 64.6
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2128.2 1812 64.7
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2127.1 1821 65.0
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2125.1 1809 63.9
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2124.4 1818 63.5
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2122.8 1800 64.3
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2113.2 1788 64.9
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2112.8 1810 64.6
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2108.2 1823 64.0
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2106.3 1791 65.0
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2102.0 1789 64.4
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2098.6 1691 66.4
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2093.9 1781 64.7
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2091.2 1826 63.5
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2079.7 1814 63.7
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2079.3 1826 63.3
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2067.4 1821 63.1
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2067.4 1821 63.1
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2059.6 1771 64.1
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2053.5 1783 63.8
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2033.5 1770 63.8
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2026.5 1753 63.3
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2019.2 1762 62.5
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 1998.4 1743 63.0
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 1997.6 1760 62.8
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 1993.4 1781 62.0
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 1983.4 1761 62.0
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 1965.3 1744 61.7
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 1956.4 1758 61.5
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1939.5 1729 61.9
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1931.0 1699 63.2
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1926.0 1729 61.1
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1925.2 1729 61.1
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1909.4 1723 61.3
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1898.2 1798 59.5
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1895.6 1744 60.6
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1839.7 1858 56.1
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1835.5 1805 56.7
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1748.8 1740 55.5
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1739.5 1757 54.6
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1671.0 1401 65.5
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1595.5 1725 54.1
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1583.2 1617 56.7
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1536.9 1335 63.0
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1444.9 1205 64.6
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1435.2 1692 51.6
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1425.6 1221 63.1
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1412.9 1503 56.4
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1402.1 1321 60.4
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1397.1 1325 59.7
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1394.0 1309 60.4
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1314.7 1970 43.3
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1220.3 1178 59.0
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1204.9 1138 61.0
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1200.3 997 65.1
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1198.3 1760 42.9
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1171.8 1917 40.0
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1169.8 1384 51.9
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1144.4 1961 38.5
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1140.6 1909 39.7
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 1.2e-311 1074.3 1090 56.6
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 4.6e-258 896.0 857 58.3
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 2.4e-254 883.6 1291 44.9
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 8.7e-241 838.6 1401 40.0
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 2.1e-210 737.6 619 61.6
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 9.4e-203 712.2 477 76.1
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 2.8e-191 674.1 521 70.1
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 5.9e-189 666.4 462 72.7
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 4.9e-175 620.2 485 70.5
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 3.2e-166 590.9 582 56.9
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 1.7e-164 585.1 595 55.1
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 2.1e-157 561.6 379 77.6
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 1.9e-155 555.1 375 78.1
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.1e-153 549.3 431 62.6
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 8.9e-153 546.2 360 74.2
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 8.9e-153 546.2 361 75.9
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 6.4e-135 486.9 382 69.6
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 9.6e-131 473.0 544 55.0
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 3.5e-125 454.5 323 68.1
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 2.8e-106 391.7 476 51.1
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 4.8e-106 391.0 284 74.6
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 2.4e-105 388.7 262 82.8
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 3.1e-105 388.3 283 74.6
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 1.5e-104 386.0 288 74.7
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 6.5e-103 380.6 258 76.0
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 1.9e-86 325.9 351 55.6
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 1.5e-67 263.1 400 44.8
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 1.2e-48 200.3 123 82.1
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 1.6e-45 189.9 132 69.7
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 9.6e-22 110.9 141 43.3
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 2.8e-21 109.4 70 80.0
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 4.8e-21 108.6 71 80.3
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 5.8e-19 101.7 70 74.3
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 9.3e-17 94.4 590 22.4
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 3.3e-14 85.9 66 63.6
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.4e-12 80.5 39 87.2
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 1.8e-12 80.1 70 57.1
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 1.8e-12 80.1 70 57.1
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 2.4e-12 79.7 70 55.7
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 5.3e-12 78.6 34 97.1
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 5.3e-12 78.6 34 97.1
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 5.3e-12 78.6 34 97.1
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 5.3e-12 78.6 34 97.1
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 5.3e-12 78.6 34 97.1
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 6.9e-12 78.2 199 26.6
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 6.0e-08 65.1 182 34.6
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 7.9e-08 64.7 96 50.0
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 1.8e-07 63.5 37 83.8


User provided reference genes

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