Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 2.9e-216 755.0 392 100.0
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 2.5e-119 433.0 300 74.3
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 1.2e-113 414.1 300 69.3
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 3.0e-96 356.3 298 63.4
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 5.1e-96 355.5 298 62.4
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 1.1e-93 347.8 253 67.2
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 3.8e-91 339.3 307 57.0
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 5.0e-91 339.0 271 61.3
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 2.6e-87 326.6 262 61.5
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 9.7e-87 324.7 253 61.7
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 9.7e-87 324.7 253 61.3
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 1.4e-85 320.9 276 58.7
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 1.2e-84 317.8 276 58.0
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 1.7e-83 313.9 263 57.0
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 2.9e-83 313.2 273 57.1
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 1.1e-82 311.2 253 60.5
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 2.5e-82 310.1 304 52.6
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 2.5e-82 310.1 272 57.7
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 2.5e-82 310.1 287 54.7
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 4.2e-82 309.3 265 58.1
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 5.5e-82 308.9 276 56.9
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 5.5e-82 308.9 252 62.7
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.6e-81 306.2 253 58.9
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.6e-81 306.2 246 61.4
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 4.7e-81 305.8 301 53.2
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 6.1e-81 305.4 271 56.1
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 8.0e-81 305.1 254 56.7
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.4e-80 304.3 255 57.6
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 1.8e-80 303.9 252 58.7
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 1.8e-80 303.9 251 58.6
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.3e-80 303.5 272 55.5
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 3.0e-80 303.1 277 55.6
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 1.2e-79 301.2 253 58.9
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.5e-79 300.8 258 56.2
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.6e-79 300.1 252 58.3
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 3.3e-79 299.7 268 56.3
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 4.4e-79 299.3 251 58.2
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 5.7e-79 298.9 250 57.6
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.3e-78 297.7 264 54.5
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.7e-78 297.4 272 54.8
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 1.7e-78 297.4 264 56.4
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 4.8e-78 295.8 272 52.6
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 8.2e-78 295.0 253 56.5
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 8.2e-78 295.0 273 53.8
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.1e-77 294.7 274 53.6
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.4e-77 294.3 265 54.0
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.8e-77 293.9 276 55.1
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 4.1e-77 292.7 282 52.5
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 9.1e-77 291.6 290 53.8
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.6e-76 290.8 271 55.0
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 3.5e-76 289.7 278 53.2
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 4.5e-76 289.3 300 51.0
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 5.9e-76 288.9 289 52.6
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.9e-76 288.9 251 56.2
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.3e-75 287.7 292 50.3
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.7e-75 287.3 282 53.9
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 2.2e-75 287.0 333 46.8
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.9e-75 286.6 440 40.9
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 8.5e-75 285.0 259 55.2
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 5.5e-74 282.3 292 50.0
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 7.2e-74 282.0 276 52.2
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.6e-73 280.8 253 54.2
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 1.6e-73 280.8 261 53.6
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.8e-72 277.3 254 54.7
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.8e-72 277.3 281 53.4
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.0e-72 276.6 244 55.3
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 6.8e-72 275.4 253 53.8
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 8.8e-72 275.0 293 50.2
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 2.6e-71 273.5 263 52.1
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 9.8e-71 271.6 264 53.4
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 1.3e-70 271.2 250 54.8
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 4.8e-70 269.2 276 48.2
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 4.8e-70 269.2 238 55.9
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 8.3e-70 268.5 276 46.0
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.1e-69 268.1 276 47.5
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 1.4e-69 267.7 252 50.0
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.8e-69 267.3 272 48.9
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 3.1e-69 266.5 258 48.1
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 4.1e-69 266.2 283 48.8
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 5.4e-69 265.8 254 52.0
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 9.1e-69 265.0 281 48.4
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.2e-68 264.6 279 48.4
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 1.6e-68 264.2 277 48.0
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 2.7e-68 263.5 251 53.8
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 3.5e-68 263.1 300 44.3
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 4.5e-68 262.7 270 48.9
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 7.7e-68 261.9 275 47.6
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.7e-67 260.8 295 45.1
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 2.3e-67 260.4 277 47.7
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 2.9e-67 260.0 258 46.5
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 2.9e-67 260.0 258 46.5
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 6.5e-67 258.8 253 49.8
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 1.9e-66 257.3 349 43.0
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 6.1e-65 252.3 181 65.2
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 6.1e-65 252.3 244 53.3
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 6.8e-64 248.8 261 47.9
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.2e-63 248.1 284 47.9
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 7.5e-63 245.4 251 48.2
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 7.5e-63 245.4 251 48.2
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.7e-62 243.0 261 47.5
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 8.3e-62 241.9 261 47.1
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 8.3e-62 241.9 261 47.1
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 1.1e-61 241.5 275 46.9
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.1e-61 239.6 260 46.9
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 5.9e-60 235.7 271 42.8
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.9e-59 233.4 277 43.7
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 4.3e-58 229.6 272 44.9
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 4.3e-58 229.6 253 43.1
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 6.1e-57 225.7 174 63.2
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 4.0e-56 223.0 219 52.1
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 5.7e-55 219.2 174 61.5
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 6.4e-54 215.7 277 40.4
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.4e-53 214.5 237 50.2
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 2.0e-52 210.7 205 53.2
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 3.9e-51 206.5 255 41.2
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.9e-50 204.1 249 43.8
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 7.3e-50 202.2 209 51.2
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.5e-42 177.2 170 53.5
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.2e-41 174.9 139 60.4
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.4e-39 166.8 183 44.8
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.9e-38 163.7 255 36.9
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.4e-37 161.4 206 44.2
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 3.2e-37 160.2 163 49.1
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 7.1e-37 159.1 199 43.2
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 1.2e-36 158.3 181 46.4
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 6.0e-36 156.0 181 47.5
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.7e-35 154.5 172 46.5
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 1.1e-34 151.8 328 31.1
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 9.5e-34 148.7 127 54.3
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 8.1e-33 145.6 124 58.1
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 1.4e-32 144.8 97 69.1
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.2e-32 142.9 420 28.6
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.8e-30 136.7 180 44.4
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 3.8e-30 136.7 255 32.5
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 3.0e-27 127.1 249 31.7
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.3e-26 123.2 233 37.3
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 2.1e-25 120.9 201 38.3
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 2.8e-25 120.6 210 31.0
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.2e-23 115.2 167 37.1
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.4e-23 113.6 86 64.0
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 2.7e-20 104.0 242 25.6
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 3.0e-19 100.5 81 60.5
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 6.2e-17 92.8 147 37.4
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 3.1e-16 90.5 66 66.7
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 3.1e-16 90.5 223 29.1
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.0e-16 90.1 64 67.2
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 9.9e-15 85.5 61 68.9
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 1.3e-14 85.1 144 35.4
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 1.3e-14 85.1 144 35.4
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.4e-13 81.6 84 47.6
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 1.9e-13 81.3 227 29.5
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 5.4e-13 79.7 100 42.0
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 7.1e-13 79.3 61 60.7
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 7.4e-10 69.3 131 30.5
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 8.1e-09 65.9 101 35.6
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 5.3e-08 63.2 90 38.9
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 5.8e-07 59.7 132 32.6
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 5.8e-07 59.7 36 69.4
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 2.9e-06 57.4 70 47.1


User provided reference genes

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