Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 1.3e-140 503.1 256 100.0
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 5.7e-112 407.9 237 86.9
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 1.4e-105 386.7 275 75.6
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 1.1e-99 367.1 242 77.7
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.1e-99 367.1 238 79.0
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 2.1e-98 362.8 227 80.6
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 2.7e-98 362.5 233 78.5
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 8.0e-98 360.9 250 74.4
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 1.0e-97 360.5 227 79.7
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 2.3e-97 359.4 224 79.0
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 4.0e-97 358.6 221 80.5
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 5.2e-97 358.2 229 78.2
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 6.8e-97 357.8 227 79.3
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 8.8e-97 357.5 226 79.6
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.5e-96 356.7 221 80.1
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 2.6e-96 355.9 227 77.5
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 3.4e-96 355.5 234 76.5
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 7.5e-96 354.4 219 79.5
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 7.5e-96 354.4 234 76.1
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 9.8e-96 354.0 215 81.4
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 9.8e-96 354.0 221 80.1
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 1.3e-95 353.6 226 77.0
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 2.8e-95 352.4 217 81.1
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 2.8e-95 352.4 233 76.8
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 6.3e-95 351.3 219 79.0
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 1.1e-94 350.5 216 81.0
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 1.1e-94 350.5 219 79.9
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 1.1e-94 350.5 219 79.5
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 1.4e-94 350.1 248 72.6
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 1.4e-94 350.1 226 78.3
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 2.4e-94 349.4 229 77.3
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 3.1e-94 349.0 222 79.3
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 4.1e-94 348.6 248 72.2
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 5.4e-94 348.2 236 75.4
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 7.0e-94 347.8 227 76.2
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 1.2e-93 347.1 219 79.0
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 1.6e-93 346.7 239 74.9
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 2.7e-93 345.9 246 72.0
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 4.5e-93 345.1 246 70.3
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 5.9e-93 344.7 227 75.8
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 7.7e-93 344.4 205 82.9
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 1.0e-92 344.0 246 73.6
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 2.3e-92 342.8 253 70.0
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 2.3e-92 342.8 222 78.8
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 2.3e-92 342.8 222 78.4
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 2.9e-92 342.4 258 68.6
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 2.9e-92 342.4 215 79.1
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 3.8e-92 342.0 226 75.7
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 5.0e-92 341.7 227 74.4
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 5.0e-92 341.7 218 78.9
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 8.6e-92 340.9 234 73.5
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 1.1e-91 340.5 253 71.1
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.5e-91 340.1 208 80.8
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 2.5e-91 339.3 248 71.0
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 2.5e-91 339.3 218 77.5
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 2.5e-91 339.3 220 76.4
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 7.2e-91 337.8 221 75.6
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 7.2e-91 337.8 260 69.6
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 7.2e-91 337.8 218 77.1
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 9.5e-91 337.4 218 77.5
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 9.5e-91 337.4 246 71.5
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 9.5e-91 337.4 218 76.6
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 1.2e-90 337.0 224 74.6
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 1.2e-90 337.0 207 80.2
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 1.6e-90 336.7 218 76.6
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 1.6e-90 336.7 215 77.2
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 2.1e-90 336.3 228 73.7
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 3.6e-90 335.5 221 75.6
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 8.0e-90 334.3 207 80.2
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 1.4e-89 333.6 221 74.7
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.8e-89 333.2 218 75.2
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 1.8e-89 333.2 246 70.7
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 2.3e-89 332.8 211 76.3
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 4.0e-89 332.0 226 72.6
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 5.2e-89 331.6 220 75.0
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 4.4e-88 328.6 227 73.1
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 5.7e-88 328.2 245 66.9
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 3.7e-87 325.5 249 67.5
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 8.3e-87 324.3 211 77.3
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 8.3e-87 324.3 236 68.6
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.4e-86 323.6 210 72.9
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 1.8e-86 323.2 185 83.8
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 2.4e-86 322.8 243 69.5
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 2.4e-86 322.8 248 68.5
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 3.1e-86 322.4 246 69.9
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 5.4e-86 321.6 246 70.3
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 5.4e-86 321.6 246 70.3
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 1.6e-85 320.1 216 75.0
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 3.5e-85 318.9 246 69.5
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 4.5e-85 318.5 244 68.4
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 5.9e-85 318.2 251 68.5
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 7.8e-85 317.8 223 74.0
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.0e-84 317.4 206 72.8
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 5.0e-84 315.1 255 67.1
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 6.6e-84 314.7 205 75.1
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 6.6e-84 314.7 246 67.9
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 8.6e-84 314.3 188 80.3
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 4.3e-83 312.0 249 66.7
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 9.5e-83 310.8 241 69.7
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 1.6e-82 310.1 208 72.6
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 6.1e-82 308.1 213 72.3
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 5.2e-81 305.1 214 72.4
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 1.2e-80 303.9 193 76.7
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 1.2e-80 303.9 225 65.3
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 2.4e-78 296.2 211 69.2
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 3.3e-75 285.8 226 67.3
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 1.1e-73 280.8 212 64.6
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 3.5e-69 265.8 189 67.2
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 8.6e-68 261.2 205 65.9
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 1.5e-67 260.4 217 61.3
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 7.8e-61 238.0 179 60.3
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 1.2e-58 230.7 177 63.3
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 1.8e-49 200.3 135 72.6
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 4.9e-47 192.2 114 82.5
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 4.2e-46 189.1 149 62.4
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 1.1e-43 181.0 236 42.8
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 2.1e-37 160.2 169 46.7
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 7.6e-24 115.2 192 35.4
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 1.0e-20 104.8 102 56.9
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.1e-19 101.3 75 70.7
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.1e-17 94.7 56 78.6
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 8.8e-12 75.1 61 59.0
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 2.0e-08 63.9 208 25.0
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 3.4e-08 63.2 208 25.0
Nn3g20127 Nelumbo nucifera HOM05D002933 ORTHO05D009221 1.0e-07 61.6 251 25.1
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 3.8e-07 59.7 233 24.0
Ca_11296_v3 Cicer arietinum L. HOM05D002933 ORTHO05D009221 8.5e-07 58.5 222 23.0
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 8.5e-07 58.5 222 23.0
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 1.4e-06 57.8 58 50.0
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 1.9e-06 57.4 176 25.6
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 2.5e-06 57.0 187 26.7
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 4.2e-06 56.2 208 22.6
Lalb_Chr21g0307341 Lupinus albus HOM05D002933 ORTHO05D009221 4.2e-06 56.2 187 23.5
PGR142G1118 Punica granatum HOM05D002933 ORTHO05D009221 4.2e-06 56.2 199 22.1
AUR62022518 Chenopodium quinoa HOM05D002933 ORTHO05D009221 5.5e-06 55.8 231 23.8
Ca_07202_v3 Cicer arietinum L. HOM05D002933 ORTHO05D007742 7.2e-06 55.5 207 23.2
Eucgr.G02907 Eucalyptus grandis HOM05D002933 ORTHO05D009221 7.2e-06 55.5 233 23.2
Lj5g0017951 Lotus japonicus HOM05D002933 ORTHO05D009221 7.2e-06 55.5 244 23.0
Glyma.20G098500 Glycine max HOM05D002933 ORTHO05D009221 9.4e-06 55.1 222 22.5
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 9.4e-06 55.1 184 25.0
THA.LOC104824260 Tarenaya hassleriana HOM05D002933 ORTHO05D009221 9.4e-06 55.1 206 24.3


User provided reference genes

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