Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 1.5e-95 352.8 182 100.0
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 1.1e-69 266.9 173 78.6
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 2.0e-66 256.1 173 72.3
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 3.3e-53 212.2 168 66.7
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 2.6e-50 202.6 174 63.2
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 4.4e-50 201.8 160 65.6
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 1.7e-49 199.9 170 60.6
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 2.2e-49 199.5 173 58.4
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 3.7e-49 198.7 175 61.1
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 4.9e-49 198.4 171 62.0
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 4.9e-49 198.4 173 58.4
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 6.4e-49 198.0 178 60.7
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 8.3e-49 197.6 173 58.4
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 1.4e-48 196.8 171 59.6
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 3.2e-48 195.7 173 60.7
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 7.0e-48 194.5 176 57.4
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 9.2e-48 194.1 164 64.0
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 2.0e-47 193.0 173 56.6
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 4.6e-47 191.8 199 53.3
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 4.6e-47 191.8 175 60.0
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 4.6e-47 191.8 175 60.0
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 7.8e-47 191.0 169 60.9
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 1.0e-46 190.7 176 56.2
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 1.7e-46 189.9 174 56.3
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 1.7e-46 189.9 175 58.9
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 2.3e-46 189.5 179 58.7
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 3.9e-46 188.7 171 60.8
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 5.0e-46 188.3 173 56.6
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 8.6e-46 187.6 181 55.8
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 1.5e-45 186.8 176 56.2
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 1.9e-45 186.4 175 56.6
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 2.5e-45 186.0 180 56.1
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 2.5e-45 186.0 172 55.2
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 4.3e-45 185.3 169 57.4
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 4.3e-45 185.3 170 57.1
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 4.3e-45 185.3 176 55.7
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 5.6e-45 184.9 179 55.3
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 9.5e-45 184.1 173 54.9
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 9.5e-45 184.1 166 60.8
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 9.5e-45 184.1 173 55.5
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 1.2e-44 183.7 171 59.1
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 2.8e-44 182.6 202 53.5
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 4.7e-44 181.8 175 54.3
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 4.7e-44 181.8 171 56.7
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.1e-43 180.6 173 54.3
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 1.8e-43 179.9 174 56.9
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 4.0e-43 178.7 173 55.5
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 8.9e-43 177.6 159 57.9
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 1.5e-42 176.8 161 60.9
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 2.0e-42 176.4 173 50.9
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 2.0e-42 176.4 173 53.2
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 4.4e-42 175.3 162 56.8
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 5.8e-42 174.9 173 52.6
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 7.5e-42 174.5 173 51.4
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 9.8e-42 174.1 173 52.0
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 9.8e-42 174.1 173 52.0
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 9.8e-42 174.1 185 51.4
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 1.7e-41 173.3 159 56.6
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 4.9e-41 171.8 174 53.4
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 4.9e-41 171.8 192 51.0
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 6.4e-41 171.4 175 52.0
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 9.2e-40 167.5 173 50.9
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 9.2e-40 167.5 176 50.0
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 1.0e-38 164.1 174 50.6
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 1.9e-37 159.8 162 51.9
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 2.5e-37 159.5 172 51.2
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 3.3e-37 159.1 172 48.3
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 4.3e-37 158.7 172 51.2
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 9.5e-37 157.5 173 48.6
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 2.1e-36 156.4 172 47.7
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 2.1e-36 156.4 172 47.7
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 2.8e-36 156.0 172 48.3
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 3.6e-36 155.6 173 48.6
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 3.6e-36 155.6 172 48.3
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 4.7e-36 155.2 172 47.7
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 8.1e-36 154.5 170 48.8
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 1.1e-35 154.1 173 47.4
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 1.1e-35 154.1 173 48.0
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 1.4e-35 153.7 172 47.1
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 2.3e-35 152.9 173 47.4
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 4.0e-35 152.1 179 47.5
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 6.8e-35 151.4 270 38.9
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 3.4e-34 149.1 181 45.3
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 7.6e-34 147.9 172 47.1
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 6.4e-33 144.8 147 53.7
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 4.1e-32 142.1 175 45.1
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 3.5e-31 139.0 188 44.1
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 2.5e-29 132.9 173 42.8
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 5.6e-29 131.7 169 42.0
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 6.2e-28 128.3 173 41.6
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 6.2e-28 128.3 160 44.4
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 1.4e-27 127.1 125 52.8
ECA238G4657 Erigeron canadensis HOM05D006295 ORTHO05D008061 1.7e-25 120.2 88 72.7
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 2.2e-25 119.8 163 44.2
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 4.2e-24 115.5 96 59.4
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 1.0e-22 110.9 173 35.3
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 6.6e-22 108.2 165 42.4
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 2.5e-21 106.3 354 27.4
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 4.3e-21 105.5 100 54.0
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 4.3e-21 105.5 173 38.7
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 9.6e-21 104.4 118 44.9
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 4.6e-15 85.5 109 46.8
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 3.9e-14 82.4 93 46.2
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 2.5e-13 79.7 75 57.3
Hund22393 Selenicereus undatus HOM05D007345 ORTHO05D009277 7.6e-10 68.2 50 68.0
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 9.9e-10 67.8 167 29.9
BraA08t35607Z Brassica rapa HOM05D006451 ORTHO05D007680 1.4e-08 63.9 136 32.4
FAN17G1940 Fragaria x ananassa HOM05D006451 ORTHO05D007680 2.4e-08 63.2 129 34.1
FAN22G0671 Fragaria x ananassa HOM05D006451 ORTHO05D007680 2.4e-08 63.2 129 34.1
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 3.2e-08 62.8 118 32.2
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 3.2e-08 62.8 118 32.2
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 3.2e-08 62.8 118 32.2
A08p37070 Brassica napus HOM05D006451 ORTHO05D007680 5.5e-08 62.0 118 32.2
FvH4_4g00880 Fragaria vesca HOM05D006451 ORTHO05D007680 5.5e-08 62.0 129 33.3
FAN12G3362 Fragaria x ananassa HOM05D006451 ORTHO05D007680 7.1e-08 61.6 129 33.3
RcHm_v2.0_Chr4g0387501 Rosa chinensis HOM05D006451 ORTHO05D007680 7.1e-08 61.6 129 34.9
Lj9A350T62 Lonicera japonica HOM05D007345 ORTHO05D009277 1.6e-07 60.5 33 87.9
Potri.008G156500 Populus trichocarpa HOM05D006451 ORTHO05D007680 2.7e-07 59.7 119 36.1
Sabra08G0119100 Salix brachista HOM05D006451 ORTHO05D007680 2.7e-07 59.7 118 33.9
Haze_11218 Corylus avellana HOM05D006451 ORTHO05D007680 3.5e-07 59.3 103 35.9
Duzib151G0283 Durio zibethinus HOM05D006451 ORTHO05D007680 6.0e-07 58.5 131 32.1
Manes.15G032000 Manihot esculenta HOM05D006451 ORTHO05D007680 6.0e-07 58.5 122 33.6
PGR004G2173 Punica granatum HOM05D006451 ORTHO05D007680 6.0e-07 58.5 122 33.6
QL06p001354 Quercus lobata HOM05D006451 ORTHO05D007680 6.0e-07 58.5 117 36.8
Sed0026394 Sechium edule HOM05D006451 ORTHO05D007680 6.0e-07 58.5 119 34.5
CsaV3_2G013500 Cucumis sativus L. HOM05D006451 ORTHO05D007680 7.9e-07 58.2 119 32.8
CiPaw.01G196900 Carya illinoinensis HOM05D006451 ORTHO05D007680 1.0e-06 57.8 120 32.5
MSTRG.4055 Avicennia marina HOM05D006451 ORTHO05D007680 1.3e-06 57.4 129 31.0
Sc25g0004270 Simmondsia chinensis HOM05D006451 ORTHO05D007680 1.3e-06 57.4 117 34.2
TAR362G1293 Trochodendron aralioides HOM05D006451 ORTHO05D007680 2.3e-06 56.6 120 32.5
AUR62043956 Chenopodium quinoa HOM05D006451 ORTHO05D007680 3.0e-06 56.2 120 31.7
Gohir.A01G023900 Gossypium hirsutum HOM05D006451 ORTHO05D007680 3.0e-06 56.2 131 30.5
Gohir.D01G021900 Gossypium hirsutum HOM05D006451 ORTHO05D007680 3.0e-06 56.2 131 30.5
Gorai.002G024400 Gossypium raimondii HOM05D006451 ORTHO05D007680 3.0e-06 56.2 131 30.5
Cc03_g04170 Coffea canephora HOM05D006451 ORTHO05D007680 3.9e-06 55.8 118 31.4
GSVIVG01018026001 Vitis vinifera HOM05D006451 ORTHO05D007680 3.9e-06 55.8 132 31.1
Manes.03G174100 Manihot esculenta HOM05D006451 ORTHO05D007680 5.1e-06 55.5 118 31.4
HPP92_001912 Vanilla planifolia HOM05D006451 ORTHO05D007680 5.1e-06 55.5 121 33.1
Ah.07g204140 Amaranthus hybridus HOM05D006451 ORTHO05D007680 8.7e-06 54.7 120 30.8
CiPaw.07G068600 Carya illinoinensis HOM05D001789 ORTHO05D001755 8.7e-06 54.7 107 33.6
AUR62034703 Chenopodium quinoa HOM05D006451 ORTHO05D007680 8.7e-06 54.7 120 30.8
Duzib052G1229 Durio zibethinus HOM05D006451 ORTHO05D007680 8.7e-06 54.7 131 29.8
Lj6A610G48 Lonicera japonica HOM05D006451 ORTHO05D007680 8.7e-06 54.7 119 31.9


User provided reference genes

Program Settings