Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 3.2e-87 325.1 169 100.0
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.4e-82 309.7 169 90.5
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 1.2e-81 306.6 169 89.3
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 1.2e-81 306.6 169 89.3
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 3.4e-81 305.1 166 90.4
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 1.3e-80 303.1 169 89.3
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.3e-80 303.1 169 89.9
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 1.7e-80 302.8 167 89.2
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.7e-80 302.8 169 87.6
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 3.8e-80 301.6 167 88.0
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 5.0e-80 301.2 168 89.3
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 6.5e-80 300.8 169 88.2
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 8.5e-80 300.4 169 87.6
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 8.5e-80 300.4 169 87.6
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 1.1e-79 300.1 168 88.7
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 1.1e-79 300.1 167 88.0
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.9e-79 299.3 169 89.3
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 2.5e-79 298.9 169 88.2
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 2.5e-79 298.9 169 87.6
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 7.2e-79 297.4 169 87.0
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 7.2e-79 297.4 169 86.4
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 7.2e-79 297.4 166 89.2
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.2e-79 297.4 166 89.2
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.2e-79 297.4 166 89.2
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 7.2e-79 297.4 166 89.2
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 1.2e-78 296.6 169 86.4
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.2e-78 296.6 169 87.0
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.2e-78 296.6 166 89.2
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.2e-78 296.6 166 88.0
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.6e-78 296.2 169 85.8
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 1.6e-78 296.2 169 87.0
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.6e-78 296.2 169 87.6
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.1e-78 295.8 169 87.0
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 2.7e-78 295.4 168 86.9
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 2.7e-78 295.4 169 86.4
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 3.6e-78 295.0 169 86.4
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 4.6e-78 294.7 166 88.0
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 4.6e-78 294.7 169 86.4
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 4.6e-78 294.7 169 87.0
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 6.1e-78 294.3 169 87.0
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 6.1e-78 294.3 169 85.8
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.0e-77 293.5 167 85.6
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.4e-77 293.1 169 84.6
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 1.4e-77 293.1 186 80.6
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.8e-77 292.7 168 86.3
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.8e-77 292.7 168 85.1
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.3e-77 292.4 168 85.1
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 3.0e-77 292.0 169 85.2
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 6.7e-77 290.8 169 86.4
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 8.8e-77 290.4 192 78.1
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 2.5e-76 288.9 169 86.4
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 4.3e-76 288.1 169 84.6
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 4.3e-76 288.1 167 87.4
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 4.3e-76 288.1 169 85.2
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 7.4e-76 287.3 167 85.0
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 9.7e-76 287.0 169 84.6
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 9.7e-76 287.0 169 84.6
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 9.7e-76 287.0 169 84.0
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 2.2e-75 285.8 169 82.8
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 2.2e-75 285.8 169 84.0
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 2.8e-75 285.4 169 83.4
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 2.8e-75 285.4 182 79.1
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 2.8e-75 285.4 169 84.0
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.7e-75 285.0 183 80.3
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.8e-75 284.6 183 80.3
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.8e-75 284.6 183 80.3
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 4.8e-75 284.6 169 84.0
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 8.2e-75 283.9 169 83.4
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 1.4e-74 283.1 169 82.8
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 1.8e-74 282.7 169 83.4
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.4e-74 282.3 169 82.2
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 2.4e-74 282.3 207 71.5
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.1e-74 282.0 169 82.2
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 4.1e-74 281.6 169 82.2
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 5.3e-74 281.2 169 82.8
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.2e-73 280.0 169 82.2
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.5e-73 279.6 169 84.0
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.0e-73 279.3 169 81.7
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 5.9e-73 277.7 169 80.5
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 2.2e-72 275.8 169 82.8
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 2.9e-72 275.4 145 93.1
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.8e-72 275.0 167 80.8
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 5.0e-72 274.6 169 82.2
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 6.5e-72 274.2 149 89.9
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 8.5e-72 273.9 169 80.5
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 3.2e-71 271.9 149 87.9
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.2e-71 271.6 214 67.3
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 5.5e-71 271.2 226 65.0
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 7.2e-71 270.8 158 85.4
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 9.4e-71 270.4 166 82.5
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.2e-70 270.0 169 78.1
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.2e-70 270.0 169 78.7
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.2e-70 270.0 169 79.3
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.6e-70 269.6 168 82.1
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 2.1e-70 269.2 149 87.9
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 2.1e-70 269.2 149 87.9
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 2.1e-70 269.2 169 78.7
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 3.6e-70 268.5 167 76.0
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 6.1e-70 267.7 197 71.6
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 6.1e-70 267.7 177 81.4
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 6.1e-70 267.7 158 84.8
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 7.9e-70 267.3 153 86.3
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 7.9e-70 267.3 149 86.6
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 1.8e-69 266.2 169 76.9
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 8.8e-69 263.8 148 87.8
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 2.0e-68 262.7 169 74.0
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.6e-68 262.3 143 88.8
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 7.4e-68 260.8 153 85.6
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 9.7e-68 260.4 147 85.0
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 6.3e-67 257.7 167 74.3
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 2.6e-65 252.3 162 76.5
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 4.5e-65 251.5 239 59.0
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 5.9e-65 251.1 167 70.1
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.7e-64 249.6 168 74.4
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 2.9e-64 248.8 167 76.6
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.9e-63 246.1 156 82.1
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.6e-62 243.0 149 79.2
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 1.0e-61 240.4 170 77.1
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 1.4e-61 240.0 149 79.2
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 9.7e-60 233.8 166 71.7
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 1.7e-59 233.0 124 87.9
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 3.7e-59 231.9 126 85.7
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 4.8e-59 231.5 124 96.8
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 2.4e-58 229.2 124 95.2
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.6e-57 225.7 152 74.3
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 1.3e-56 223.4 169 72.8
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 8.5e-56 220.7 166 71.1
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-55 220.3 121 91.7
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 1.5e-55 219.9 121 90.9
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 1.5e-55 219.9 121 90.9
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-55 218.8 121 90.1
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 7.2e-55 217.6 157 66.9
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 9.4e-55 217.2 123 89.4
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 3.6e-54 215.3 168 67.3
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 3.6e-54 215.3 123 82.1
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.7e-54 214.9 132 81.1
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 4.0e-53 211.8 191 56.0
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 1.2e-52 210.3 131 85.5
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 4.5e-49 198.4 148 70.3
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 7.7e-49 197.6 141 74.5
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.2e-48 196.1 145 73.1
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.1e-47 193.7 136 67.6
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 2.8e-43 179.1 106 86.8
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 3.5e-41 172.2 90 93.3
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 1.9e-39 166.4 90 83.3
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.6e-38 163.3 94 92.6
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 2.0e-33 146.4 83 89.2
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 9.5e-31 137.5 112 64.3
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 5.8e-28 128.3 94 68.1
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 5.8e-28 128.3 99 65.7
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.4e-27 124.8 82 75.6
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 8.3e-27 124.4 73 87.7
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 4.1e-26 122.1 103 65.0
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.6e-22 110.2 74 73.0
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.4e-20 102.4 75 68.0
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 9.8e-20 100.9 78 61.5
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.7e-19 99.0 64 75.0
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 9.2e-18 94.4 65 73.8
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 8.6e-16 87.8 167 35.9
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 8.6e-16 87.8 130 39.2
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 1.9e-15 86.7 49 91.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 1.9e-15 86.7 49 91.8
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.8e-13 80.1 108 50.9
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 2.2e-11 73.2 168 32.7
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.9e-11 72.0 44 70.5
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.9e-08 62.4 38 71.1


User provided reference genes

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