Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 0.0e+00 1613.6 863 100.0
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 7.4e-273 944.1 884 63.1
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.2e-265 920.2 876 63.5
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.2e-259 900.2 874 61.7
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 6.2e-203 711.8 881 49.5
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.4e-202 710.7 925 49.7
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 7.6e-193 678.3 921 49.1
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.3e-192 677.6 936 48.6
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.7e-192 677.2 921 49.2
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.8e-192 676.0 933 48.0
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 4.9e-192 675.6 933 46.9
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.2e-190 671.0 934 47.8
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 2.7e-190 669.8 1002 46.5
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 1.0e-189 667.9 928 48.0
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 5.3e-186 655.6 933 48.3
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 6.9e-186 655.2 930 49.1
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 2.2e-184 650.2 935 48.7
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.0e-184 649.0 923 47.8
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 6.5e-184 648.7 927 47.8
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.9e-183 647.1 923 47.8
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 3.5e-182 642.9 946 46.3
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.6e-182 642.5 922 47.4
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 7.9e-182 641.7 924 47.0
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 7.9e-182 641.7 937 45.1
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 2.3e-181 640.2 941 46.4
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.3e-180 636.3 921 47.2
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 9.7e-180 634.8 922 47.1
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 9.7e-180 634.8 905 47.6
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 3.7e-179 632.9 947 45.9
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 5.9e-177 625.5 939 46.8
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 5.0e-176 622.5 918 49.3
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.2e-174 617.8 917 47.4
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 2.1e-174 617.1 912 47.0
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.7e-174 616.7 930 47.4
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 3.6e-174 616.3 917 43.2
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 7.9e-174 615.1 929 47.5
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.0e-173 614.8 917 47.0
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.4e-173 614.4 926 46.1
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.1e-173 612.5 937 46.5
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.1e-172 611.3 938 46.4
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.0e-172 610.5 911 46.4
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.4e-172 608.6 847 47.6
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.7e-171 607.4 855 47.4
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 2.2e-171 607.1 926 46.8
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 4.8e-171 605.9 901 46.5
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 8.2e-171 605.1 899 48.4
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-170 604.7 846 46.5
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.4e-170 604.4 947 45.6
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.4e-170 604.4 978 43.7
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 3.1e-170 603.2 889 45.7
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 3.8e-168 596.3 919 46.1
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.1e-167 594.7 922 44.6
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 2.5e-167 593.6 931 45.9
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 4.7e-166 589.3 930 44.5
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 4.7e-166 589.3 921 44.6
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 2.3e-165 587.0 871 45.4
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.0e-165 586.6 910 44.9
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 4.4e-164 582.8 877 44.4
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 4.4e-164 582.8 910 43.4
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.7e-164 582.4 935 44.3
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 9.7e-164 581.6 887 42.4
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.8e-163 580.1 937 44.3
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 2.4e-162 577.0 825 45.5
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.1e-162 576.6 935 44.1
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 1.2e-161 574.7 652 54.0
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.5e-161 574.3 832 46.8
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 2.0e-161 573.9 886 46.4
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 4.5e-161 572.8 916 44.9
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.3e-160 571.2 933 42.1
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.2e-160 570.5 819 45.7
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 5.0e-160 569.3 927 42.5
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.6e-158 564.3 957 43.9
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.6e-158 564.3 812 46.1
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.3e-157 560.5 855 44.4
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 1.1e-156 558.1 929 43.3
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 3.7e-155 553.1 922 42.7
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 6.3e-155 552.4 904 42.8
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.1e-154 550.1 771 48.0
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 3.1e-154 550.1 893 43.4
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 5.9e-153 545.8 921 42.2
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 5.9e-153 545.8 927 42.3
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 3.8e-152 543.1 867 44.8
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.1e-151 541.6 877 43.7
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 1.2e-150 538.1 903 42.0
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.0e-149 535.0 920 42.7
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 6.8e-149 532.3 989 41.0
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.2e-148 531.6 906 42.9
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.6e-148 530.4 921 41.6
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.1e-146 523.5 935 41.9
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 4.5e-145 519.6 958 40.7
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 5.9e-145 519.2 932 43.6
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 5.0e-144 516.2 935 41.6
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.2e-143 513.1 855 42.5
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.6e-142 511.1 896 41.3
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 6.8e-141 505.8 932 41.1
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.8e-141 505.8 888 44.0
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.2e-140 505.0 889 42.0
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.4e-140 503.4 930 40.2
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.2e-139 500.7 917 41.9
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 2.3e-136 490.7 915 40.7
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 2.9e-136 490.3 825 45.3
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 9.5e-135 485.3 853 42.3
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.2e-134 485.0 874 40.8
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 6.1e-134 482.6 914 40.5
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.4e-133 481.5 797 45.4
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.5e-132 478.0 902 41.5
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 3.4e-132 476.9 845 42.7
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.7e-131 474.6 643 47.6
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 2.2e-131 474.2 842 42.5
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 2.2e-131 474.2 884 40.4
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 4.9e-131 473.0 904 40.4
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 7.8e-129 465.7 825 42.5
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.0e-128 465.3 885 39.9
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.9e-128 463.8 939 38.0
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 6.6e-128 462.6 904 40.0
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 4.3e-127 459.9 910 40.0
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 1.6e-126 458.0 919 38.8
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 1.1e-122 445.3 912 39.4
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 3.2e-122 443.7 610 46.9
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 6.0e-121 439.5 869 40.3
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.3e-120 438.3 862 40.0
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.3e-120 438.3 862 40.0
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.5e-119 434.9 869 39.9
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 8.9e-117 425.6 850 39.3
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-116 425.2 850 39.3
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 2.0e-116 424.5 905 38.3
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 4.4e-116 423.3 854 39.2
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 9.8e-116 422.2 841 39.4
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.7e-115 420.2 671 44.3
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 1.9e-114 417.9 854 39.5
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.4e-114 417.5 911 39.2
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 3.2e-114 417.2 854 38.9
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 3.1e-109 400.6 762 38.2
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 8.9e-109 399.1 836 37.8
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 2.5e-103 380.9 656 44.1
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 3.8e-99 367.1 825 36.5
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.1e-95 355.5 505 46.9
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.3e-95 352.8 845 35.0
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.1e-93 347.4 683 38.8
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.0e-92 344.7 909 34.8
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 2.4e-90 337.8 453 45.9
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.7e-88 331.6 626 42.0
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.5e-87 327.8 829 36.7
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.9e-83 313.5 439 47.8
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 4.3e-79 300.4 578 40.0
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 6.0e-73 280.0 901 33.6
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.3e-72 278.1 565 36.3
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 3.3e-71 274.2 891 31.1
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.7e-71 273.5 814 31.1
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.5e-68 265.4 780 32.7
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.6e-65 255.4 826 32.2
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.1e-61 242.7 702 34.5
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 9.4e-58 229.6 341 44.0
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.4e-56 225.7 354 44.4
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.8e-56 225.3 285 46.0
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.2e-51 208.4 882 28.1
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 4.4e-47 194.1 397 44.6
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.1e-45 189.5 365 38.1
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 2.6e-44 184.9 279 46.2
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 6.1e-41 173.7 308 41.6
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 9.7e-39 166.4 475 30.7
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 7.0e-37 160.2 113 68.1
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.9e-35 154.8 578 29.6
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 3.8e-35 154.5 248 41.5
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 6.5e-35 153.7 220 42.7
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 4.0e-32 144.4 254 39.0
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.8e-30 137.5 251 45.4
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.7e-27 129.0 119 54.6
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.6e-25 121.3 179 41.3
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 6.3e-22 110.5 134 47.0
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 1.6e-20 105.9 144 41.7
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 3.0e-16 91.7 81 49.4
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 7.0e-13 80.5 117 45.3
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 7.0e-13 80.5 76 48.7
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 1.6e-12 79.3 143 38.5
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.0e-12 79.0 112 46.4
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 7.8e-12 77.0 98 59.2
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.3e-11 76.3 54 64.8
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.1e-09 68.9 137 33.6
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 8.0e-09 67.0 124 35.5
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.2e-07 63.2 42 54.8


User provided reference genes

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