Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 0.0e+00 1191.4 591 100.0
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 8.2e-138 495.0 374 67.9
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 3.1e-113 413.3 371 60.4
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 1.6e-112 411.0 368 58.4
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 5.9e-112 409.1 374 58.8
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 1.3e-111 407.9 372 57.0
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 2.9e-111 406.8 374 59.6
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 6.5e-111 405.6 370 58.9
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 6.5e-111 405.6 376 59.0
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.5e-110 404.4 376 58.8
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 2.5e-110 403.7 358 59.5
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 2.5e-110 403.7 369 58.8
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 3.2e-110 403.3 376 58.8
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 3.2e-110 403.3 381 56.4
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 9.4e-110 401.7 381 56.4
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 1.2e-109 401.4 379 55.9
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.2e-109 401.4 376 58.0
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 1.2e-109 401.4 371 57.1
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 2.7e-109 400.2 377 57.6
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 3.6e-109 399.8 372 56.5
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 4.7e-109 399.4 372 57.8
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 1.8e-108 397.5 371 56.1
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 1.8e-108 397.5 371 56.1
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 3.0e-108 396.7 370 57.8
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 5.2e-108 396.0 383 55.1
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 5.2e-108 396.0 379 55.9
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 6.8e-108 395.6 374 57.2
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 6.8e-108 395.6 377 56.0
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 6.8e-108 395.6 374 56.4
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 1.2e-107 394.8 371 55.5
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 1.5e-107 394.4 373 56.3
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 2.6e-107 393.7 383 55.4
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 2.6e-107 393.7 368 55.7
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 2.6e-107 393.7 368 55.4
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 4.4e-107 392.9 373 55.5
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 7.5e-107 392.1 376 55.9
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 7.5e-107 392.1 374 55.1
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 9.8e-107 391.7 371 56.3
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 1.3e-106 391.3 370 55.7
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 1.3e-106 391.3 372 57.0
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 2.2e-106 390.6 387 54.8
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 2.8e-106 390.2 378 55.3
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 3.7e-106 389.8 383 55.1
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 4.8e-106 389.4 375 56.0
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 6.3e-106 389.0 379 56.5
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 6.3e-106 389.0 371 55.5
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 8.3e-106 388.7 377 55.7
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 8.3e-106 388.7 372 56.2
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 8.3e-106 388.7 376 54.5
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 1.4e-105 387.9 372 56.2
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 1.4e-105 387.9 380 56.1
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 2.4e-105 387.1 383 55.1
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 3.1e-105 386.7 378 56.6
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 7.0e-105 385.6 371 55.5
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 7.0e-105 385.6 383 54.8
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 7.0e-105 385.6 367 56.1
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 9.1e-105 385.2 369 56.6
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 1.2e-104 384.8 396 52.5
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 1.2e-104 384.8 373 54.4
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 1.6e-104 384.4 379 54.9
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 1.6e-104 384.4 376 55.6
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 2.0e-104 384.0 374 56.7
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 7.7e-104 382.1 373 53.6
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.3e-103 381.3 382 55.0
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 1.7e-103 380.9 357 56.6
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 2.2e-103 380.6 371 55.5
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 2.2e-103 380.6 373 56.0
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 8.5e-103 378.6 378 53.7
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.5e-102 377.9 370 55.1
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 2.5e-102 377.1 369 55.8
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 5.5e-102 375.9 378 54.5
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 1.2e-101 374.8 371 54.2
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 2.1e-101 374.0 369 55.8
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 2.7e-101 373.6 361 56.5
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 4.7e-101 372.9 376 54.5
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 6.1e-101 372.5 376 54.3
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 1.0e-100 371.7 372 55.1
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 3.0e-100 370.2 357 56.6
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 5.2e-100 369.4 361 57.9
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 6.8e-100 369.0 373 55.8
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 6.8e-100 369.0 370 54.6
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 8.8e-100 368.6 362 54.7
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 2.6e-99 367.1 390 51.8
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 5.7e-99 365.9 347 57.9
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 2.8e-98 363.6 375 55.2
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 3.7e-98 363.2 374 52.7
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 3.7e-98 363.2 368 54.6
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 1.4e-97 361.3 378 52.9
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 3.1e-97 360.1 383 52.5
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 4.1e-97 359.8 439 47.6
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.2e-96 358.2 366 54.6
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.2e-96 358.2 366 54.6
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 1.1e-94 351.7 377 52.0
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 1.9e-94 350.9 372 56.2
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 5.6e-94 349.4 377 51.7
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 1.2e-91 341.7 363 53.2
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 5.7e-91 339.3 364 51.4
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 2.3e-87 327.4 374 49.5
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 1.1e-86 325.1 394 50.0
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 6.8e-84 315.8 365 47.4
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 8.9e-84 315.5 353 52.7
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 6.4e-82 309.3 364 49.5
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 3.5e-80 303.5 372 44.4
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 1.0e-79 302.0 379 47.5
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 6.6e-79 299.3 384 48.7
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 2.1e-77 294.3 371 45.6
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 1.5e-75 288.1 379 42.5
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 6.4e-74 282.7 380 42.9
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 1.1e-68 265.4 370 40.3
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 5.4e-65 253.1 251 57.0
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 4.6e-64 250.0 317 47.6
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 8.6e-63 245.7 365 40.8
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 4.4e-59 233.4 314 43.3
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 3.8e-58 230.3 276 48.2
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 4.3e-54 216.9 225 52.4
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 1.6e-53 214.9 407 36.9
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 3.3e-46 190.7 384 35.9
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.2e-43 182.2 176 56.2
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.2e-43 182.2 176 56.2
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 1.3e-34 152.1 387 33.1
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 1.9e-33 148.3 133 55.6
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 1.8e-31 141.7 107 62.6
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 4.1e-28 130.6 111 62.2
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 5.0e-26 123.6 392 28.6
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 9.3e-25 119.4 379 28.8
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 6.1e-24 116.7 117 52.1
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.3e-23 115.5 139 50.4
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 1.6e-16 92.0 83 56.6
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 4.7e-08 63.9 426 22.5
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 4.4e-06 57.4 307 24.8
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 7.4e-06 56.6 109 37.6


User provided reference genes

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