Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 5.7e-161 570.9 287 100.0
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 3.9e-109 398.7 254 82.3
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 6.2e-107 391.3 223 88.3
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 5.2e-106 388.3 284 73.6
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 3.0e-101 372.5 252 75.0
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 5.1e-101 371.7 235 80.4
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 6.6e-101 371.3 212 85.8
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.1e-100 370.5 217 86.2
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 7.3e-100 367.9 227 81.9
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 1.6e-99 366.7 225 81.8
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 1.6e-99 366.7 215 85.6
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.1e-99 366.3 289 67.5
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 2.8e-99 365.9 272 70.2
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 6.2e-99 364.8 221 81.4
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 6.2e-99 364.8 229 79.9
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 1.1e-98 364.0 235 78.3
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 1.1e-98 364.0 217 83.9
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.4e-98 363.6 272 69.9
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 1.8e-98 363.2 275 70.9
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 2.4e-98 362.8 207 87.0
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 2.4e-98 362.8 229 79.9
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 3.1e-98 362.5 230 80.4
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.1e-98 362.5 211 84.8
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 3.1e-98 362.5 240 76.2
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 3.1e-98 362.5 198 89.4
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 5.3e-98 361.7 275 70.5
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 9.0e-98 360.9 201 88.1
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 1.2e-97 360.5 230 80.0
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 1.2e-97 360.5 277 70.4
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 1.2e-97 360.5 221 81.0
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 1.5e-97 360.1 217 82.9
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 2.0e-97 359.8 270 71.1
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 2.0e-97 359.8 266 72.6
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.6e-97 359.4 198 89.4
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 2.6e-97 359.4 198 89.4
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 2.6e-97 359.4 198 88.9
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 3.4e-97 359.0 246 75.6
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 3.4e-97 359.0 210 83.8
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 4.4e-97 358.6 283 68.6
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 5.8e-97 358.2 274 69.3
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 5.8e-97 358.2 233 78.1
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 5.8e-97 358.2 210 84.8
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 7.6e-97 357.8 281 69.8
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 7.6e-97 357.8 235 77.0
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 9.9e-97 357.5 285 68.1
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 1.3e-96 357.1 210 84.8
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 1.3e-96 357.1 232 78.4
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 1.7e-96 356.7 282 69.9
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 2.2e-96 356.3 290 67.9
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 2.9e-96 355.9 217 81.6
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 4.9e-96 355.1 219 80.4
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 6.4e-96 354.8 256 73.0
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 6.4e-96 354.8 256 71.1
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 6.4e-96 354.8 198 87.9
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 8.4e-96 354.4 217 81.1
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 8.4e-96 354.4 217 81.6
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 1.1e-95 354.0 225 77.8
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 1.1e-95 354.0 273 68.5
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.4e-95 353.6 221 80.1
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.9e-95 353.2 226 77.9
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 1.9e-95 353.2 287 66.6
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 2.4e-95 352.8 210 83.3
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 3.2e-95 352.4 198 87.4
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 3.2e-95 352.4 198 87.4
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 3.2e-95 352.4 198 86.4
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 4.2e-95 352.1 198 86.4
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 5.4e-95 351.7 199 86.9
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 9.3e-95 350.9 234 76.5
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 1.2e-94 350.5 227 77.1
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 1.2e-94 350.5 204 84.3
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 1.2e-94 350.5 279 67.0
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 1.6e-94 350.1 227 77.5
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 1.6e-94 350.1 280 66.8
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 2.1e-94 349.7 283 67.1
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 2.7e-94 349.4 198 85.9
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 2.7e-94 349.4 238 75.6
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 2.7e-94 349.4 224 79.5
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 3.5e-94 349.0 198 86.9
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 4.6e-94 348.6 226 77.0
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 4.6e-94 348.6 226 77.0
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 4.6e-94 348.6 198 86.4
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.0e-93 347.4 258 70.9
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.0e-93 347.4 188 88.3
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 1.0e-93 347.4 226 76.1
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 1.7e-93 346.7 203 85.2
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 2.3e-93 346.3 198 84.3
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 3.0e-93 345.9 209 82.8
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 3.9e-93 345.5 191 85.9
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 5.1e-93 345.1 224 77.7
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 5.1e-93 345.1 198 86.9
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 6.6e-93 344.7 269 69.5
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.1e-92 344.0 228 76.3
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.1e-92 344.0 198 85.9
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 3.3e-92 342.4 262 68.3
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 5.6e-92 341.7 270 68.1
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.3e-91 340.5 271 66.4
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.1e-91 339.7 271 66.4
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.1e-91 339.7 250 70.0
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 4.8e-91 338.6 277 65.7
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 8.1e-91 337.8 279 65.9
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.1e-90 337.4 269 66.2
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 1.4e-90 337.0 281 67.3
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 2.4e-90 336.3 223 77.6
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 5.3e-90 335.1 198 83.3
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 6.9e-90 334.7 286 63.6
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 1.2e-89 334.0 201 81.6
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 2.0e-89 333.2 216 75.5
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 2.6e-89 332.8 216 75.9
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 3.4e-89 332.4 253 68.4
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 9.9e-89 330.9 214 77.1
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 3.8e-88 328.9 214 76.6
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 6.4e-88 328.2 273 66.7
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.7e-86 322.8 315 57.5
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 1.0e-85 320.9 189 85.2
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 1.8e-85 320.1 198 79.8
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 2.5e-84 316.2 166 91.0
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 6.2e-83 311.6 192 81.8
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 6.2e-83 311.6 301 59.5
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 3.4e-81 305.8 236 69.1
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 2.2e-80 303.1 210 73.3
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.9e-80 302.8 208 73.6
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.1e-79 300.8 193 77.7
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 1.4e-79 300.4 166 89.2
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 2.5e-79 299.7 242 66.9
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 4.6e-78 295.4 204 72.1
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 6.2e-75 285.0 198 70.7
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 4.5e-73 278.9 237 63.7
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 7.6e-73 278.1 152 87.5
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.7e-72 276.9 151 88.1
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 2.2e-72 276.6 153 86.3
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 8.4e-72 274.6 241 61.8
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.2e-71 272.7 158 82.3
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 4.2e-71 272.3 152 86.8
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 5.5e-71 271.9 145 91.0
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.1e-70 270.0 197 68.0
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 3.5e-70 269.2 165 78.2
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 3.9e-69 265.8 148 85.8
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 9.7e-68 261.2 198 69.7
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.3e-67 260.8 159 82.4
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 2.0e-65 253.4 224 62.9
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 1.7e-64 250.4 164 76.8
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.1e-63 247.7 201 67.7
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.2e-63 246.1 149 81.9
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 4.8e-59 232.3 167 72.5
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 6.3e-59 231.9 176 68.2
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 6.9e-58 228.4 196 64.8
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 1.0e-53 214.5 132 75.8
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 8.8e-53 211.5 226 45.1
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 1.4e-45 187.6 159 62.3
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 1.4e-45 187.6 346 39.0
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 1.8e-45 187.2 138 70.3
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 9.7e-44 181.4 106 83.0
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 1.0e-37 161.4 188 44.1
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 8.8e-37 158.3 145 58.6
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 1.2e-33 147.9 200 40.0
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 3.8e-32 142.9 225 41.8
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 5.0e-32 142.5 84 83.3
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 6.1e-22 109.0 69 73.9
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 3.0e-21 106.7 69 72.5
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 4.1e-18 96.3 59 79.7
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 2.5e-15 87.0 85 56.5
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.7e-11 73.2 36 91.7
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 9.2e-10 68.6 36 86.1
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.0e-09 65.9 40 77.5
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.0e-08 63.5 42 71.4
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 3.0e-08 63.5 118 35.6
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 6.6e-08 62.4 83 39.8
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 1.1e-07 61.6 32 84.4
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.5e-07 61.2 34 82.4
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 3.6e-06 56.6 53 50.9
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 6.2e-06 55.8 37 73.0


User provided reference genes

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