Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 2.1e-197 692.2 352 100.0
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 1.7e-178 629.4 350 90.3
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 2.2e-178 629.0 352 88.9
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 3.6e-165 585.1 352 78.7
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 3.6e-165 585.1 350 78.0
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 7.0e-161 570.9 352 76.7
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 1.6e-160 569.7 352 75.9
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 4.5e-160 568.2 339 79.6
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 2.2e-159 565.8 352 76.4
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 5.0e-159 564.7 352 76.4
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 6.5e-159 564.3 352 74.1
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.5e-158 562.4 352 76.1
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 2.5e-158 562.4 352 78.7
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 9.4e-158 560.5 352 76.1
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 9.4e-158 560.5 352 78.7
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 9.4e-158 560.5 352 78.7
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 1.2e-157 560.1 352 74.7
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 1.2e-157 560.1 352 74.1
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 8.0e-157 557.4 352 77.3
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 1.0e-156 557.0 352 74.1
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 1.4e-156 556.6 351 74.4
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 4.0e-156 555.1 350 74.3
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 6.8e-156 554.3 352 74.7
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 6.8e-156 554.3 353 74.8
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.5e-155 553.1 350 73.7
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 1.5e-155 553.1 350 72.6
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 1.5e-155 553.1 352 74.4
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 2.0e-155 552.7 352 74.4
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 2.6e-155 552.4 361 72.3
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 2.6e-155 552.4 350 74.0
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 4.4e-155 551.6 352 74.1
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 9.8e-155 550.4 352 75.6
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 9.8e-155 550.4 352 72.7
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 3.7e-154 548.5 355 73.0
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 1.1e-153 547.0 352 72.2
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 2.4e-153 545.8 352 72.4
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 3.1e-153 545.4 351 72.6
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 4.1e-153 545.0 350 74.0
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 5.4e-153 544.7 352 72.7
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 7.0e-153 544.3 350 72.6
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 1.6e-152 543.1 350 72.9
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 1.6e-152 543.1 350 72.9
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.6e-152 543.1 350 72.3
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 2.0e-152 542.7 354 73.2
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 1.3e-151 540.0 352 71.9
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.7e-151 539.7 352 72.2
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 2.3e-151 539.3 338 76.3
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.9e-151 538.9 352 72.7
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 5.0e-151 538.1 352 72.7
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 6.6e-151 537.7 352 71.9
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 8.6e-151 537.3 351 72.9
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 8.6e-151 537.3 353 72.8
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.5e-150 536.6 352 71.0
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 1.5e-150 536.6 340 75.6
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 1.9e-150 536.2 339 73.5
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 2.5e-150 535.8 352 71.9
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 1.2e-149 533.5 352 71.6
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 2.8e-149 532.3 374 68.7
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 3.6e-149 531.9 352 71.6
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 6.1e-149 531.2 352 70.2
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 8.0e-149 530.8 352 73.6
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 1.4e-148 530.0 352 74.7
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.8e-148 529.6 352 75.0
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 1.8e-148 529.6 352 69.9
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 3.0e-148 528.9 352 74.4
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 4.0e-148 528.5 352 70.7
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 2.0e-147 526.2 352 74.4
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 3.4e-147 525.4 347 70.6
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 3.4e-147 525.4 352 71.3
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 3.4e-147 525.4 352 71.3
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 3.4e-147 525.4 352 70.5
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 4.4e-147 525.0 352 70.7
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 9.8e-147 523.9 352 69.6
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 1.3e-146 523.5 352 69.6
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 3.7e-146 521.9 352 71.3
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 4.9e-146 521.5 352 74.1
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 1.1e-145 520.4 352 70.7
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.4e-145 520.0 319 76.8
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 3.2e-145 518.8 339 73.5
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 3.2e-145 518.8 352 69.3
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 5.4e-145 518.1 339 70.2
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 1.6e-144 516.5 338 70.1
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.7e-144 515.8 352 69.6
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 3.5e-144 515.4 352 73.0
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 1.7e-143 513.1 351 70.9
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 6.6e-143 511.1 383 67.6
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 3.3e-142 508.8 355 69.0
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 9.5e-142 507.3 358 67.9
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.0e-140 503.8 346 72.5
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 1.8e-140 503.1 338 71.9
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 6.8e-140 501.1 319 73.7
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 1.3e-138 496.9 408 60.8
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 1.9e-137 493.0 321 74.8
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 1.5e-131 473.4 319 69.9
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 4.4e-131 471.9 296 78.7
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 1.7e-130 469.9 353 63.2
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 2.4e-129 466.1 293 73.7
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 4.1e-129 465.3 295 73.9
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 5.4e-129 464.9 353 62.6
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 1.6e-128 463.4 295 73.6
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 1.6e-128 463.4 295 73.6
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 2.7e-128 462.6 338 63.6
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 4.6e-128 461.8 319 73.0
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 3.4e-123 445.7 353 60.1
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 2.3e-119 433.0 305 67.9
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 1.1e-118 430.6 323 65.0
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 1.9e-118 429.9 396 57.1
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 9.3e-113 411.0 269 69.9
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 1.0e-111 407.5 255 74.9
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 6.4e-106 388.3 353 56.9
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 3.0e-103 379.4 271 69.7
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 1.9e-102 376.7 223 78.9
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.8e-100 370.2 201 85.6
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 9.3e-89 331.3 180 85.0
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 6.9e-84 315.1 358 46.1
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 9.3e-81 304.7 355 43.7
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 3.8e-74 282.7 231 58.4
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 6.5e-74 282.0 203 65.5
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 6.5e-74 282.0 158 81.0
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 6.7e-71 271.9 355 40.6
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 2.5e-70 270.0 216 62.5
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 6.3e-69 265.4 212 61.3
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 5.0e-58 229.2 174 64.9
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 9.4e-49 198.4 121 76.0
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 1.2e-46 191.4 372 30.6
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.7e-45 187.6 108 78.7
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 3.8e-42 176.4 90 90.0
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 5.4e-36 156.0 109 67.9
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 2.0e-27 127.5 129 50.4
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 8.6e-26 122.1 72 72.2
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 8.6e-26 122.1 306 26.8
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.1e-25 121.7 82 64.6
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 4.0e-23 113.2 117 49.6
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 6.8e-23 112.5 73 71.2
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.2e-21 107.5 69 71.0
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.1e-20 105.1 92 56.5
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 5.4e-20 102.8 216 35.2
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 5.8e-14 82.8 44 84.1
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.3e-13 81.6 54 74.1
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 9.2e-12 75.5 60 53.3
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.7e-11 73.9 60 55.0
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 6.0e-11 72.8 150 35.3
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 1.5e-09 68.2 42 69.0
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 5.6e-09 66.2 357 21.8
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 1.2e-08 65.1 42 66.7
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 4.7e-08 63.2 32 78.1
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 6.2e-08 62.8 34 70.6
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 4.0e-07 60.1 46 60.9
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.5e-06 58.2 41 61.0
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 3.4e-06 57.0 48 56.2


User provided reference genes

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