Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.0e-304 1049.3 546 100.0
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 3.6e-148 529.3 575 60.3
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 9.2e-144 514.6 549 60.8
ECA238G1893 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.1e-96 358.2 330 63.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 7.7e-66 255.8 587 38.7
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 3.6e-63 246.9 613 36.9
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 2.6e-53 214.2 625 34.6
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.3e-52 211.8 556 35.1
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.8e-52 210.7 553 34.5
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 2.0e-50 204.5 510 37.6
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.7e-49 201.4 630 33.5
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.1e-48 198.7 578 32.5
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 1.6e-47 194.9 555 33.9
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 6.8e-46 189.5 497 33.0
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 4.9e-44 183.3 584 34.6
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 3.2e-43 180.6 623 32.6
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 3.5e-42 177.2 563 36.8
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 6.0e-42 176.4 381 35.7
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.7e-41 174.9 649 31.7
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 2.3e-41 174.5 604 32.5
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.6e-41 172.6 603 30.3
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 1.5e-40 171.8 640 31.1
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 1.5e-40 171.8 342 37.1
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 2.5e-40 171.0 634 32.8
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 7.3e-40 169.5 602 31.7
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 3.6e-39 167.2 590 31.9
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 4.7e-39 166.8 357 36.7
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 4.7e-39 166.8 650 30.8
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.8e-38 164.9 643 29.2
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 2.3e-38 164.5 338 37.9
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 6.8e-38 162.9 609 32.7
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.2e-37 162.2 500 31.0
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.2e-37 162.2 531 35.0
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.6e-37 161.0 532 34.0
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 2.6e-37 161.0 560 33.4
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 5.8e-37 159.8 427 34.4
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.3e-36 158.7 348 38.5
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 4.9e-36 156.8 594 32.0
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 4.9e-36 156.8 717 27.1
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 6.4e-36 156.4 611 30.3
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.1e-35 155.6 582 31.6
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 1.1e-35 155.6 632 32.0
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.4e-35 155.2 502 30.3
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.1e-35 153.7 704 27.8
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 7.0e-35 152.9 656 28.7
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.0e-35 152.9 704 28.0
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 2.7e-34 151.0 613 31.5
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 4.6e-34 150.2 363 37.2
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 6.0e-34 149.8 697 30.3
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 2.3e-33 147.9 621 29.0
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 3.0e-33 147.5 458 33.2
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 3.9e-33 147.1 552 31.9
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 5.1e-33 146.7 639 30.5
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-32 145.6 618 29.8
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 1.1e-32 145.6 618 29.8
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.5e-32 145.2 374 34.8
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 5.6e-32 143.3 311 37.6
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.4e-30 138.7 598 30.8
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.8e-30 138.3 584 30.1
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 3.1e-30 137.5 566 30.4
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.5e-29 135.2 589 29.7
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.0e-29 134.8 560 29.5
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 5.8e-29 133.3 610 28.0
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 9.9e-29 132.5 343 33.2
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 1.7e-28 131.7 572 29.5
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.7e-28 131.7 560 31.2
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.2e-28 131.3 609 29.1
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 3.7e-28 130.6 562 30.8
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 3.7e-28 130.6 434 31.6
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.1e-27 129.0 575 30.1
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.9e-27 128.3 557 31.1
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.4e-27 127.9 543 30.9
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 3.2e-27 127.5 560 28.8
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 4.1e-27 127.1 396 33.3
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 3.5e-26 124.0 580 28.6
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.6e-26 123.6 378 32.0
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 6.0e-26 123.2 689 26.4
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 3.9e-25 120.6 558 28.7
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 5.1e-25 120.2 650 27.4
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 8.6e-25 119.4 696 27.6
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 1.9e-24 118.2 382 32.2
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 1.9e-24 118.2 697 27.1
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 1.9e-24 118.2 684 26.8
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 2.5e-24 117.9 235 38.3
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 3.3e-24 117.5 430 31.4
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 1.2e-23 115.5 299 33.8
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.2e-23 115.5 269 34.6
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.2e-23 115.5 577 29.6
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 1.6e-23 115.2 328 34.1
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.6e-23 115.2 312 32.7
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 4.7e-23 113.6 356 32.3
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 4.7e-23 113.6 354 31.1
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 8.1e-23 112.8 548 29.2
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 6.8e-22 109.8 573 28.3
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 6.8e-22 109.8 600 28.7
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.5e-21 108.6 327 36.7
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 3.4e-21 107.5 239 36.0
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 1.7e-20 105.1 419 27.9
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 2.2e-20 104.8 393 29.0
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 2.9e-20 104.4 634 27.9
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 3.8e-20 104.0 237 35.0
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.9e-19 101.7 473 28.3
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 2.4e-19 101.3 308 31.5
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 2.4e-19 101.3 684 26.2
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.2e-19 100.5 382 29.1
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 5.4e-19 100.1 555 28.6
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.2e-18 99.0 709 25.7
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 1.2e-18 99.0 563 27.2
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 1.2e-18 99.0 665 25.6
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.2e-18 99.0 570 27.0
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 3.5e-18 97.4 291 29.9
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 7.8e-18 96.3 202 38.1
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 7.8e-18 96.3 564 25.9
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 1.3e-17 95.5 519 30.3
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 1.3e-17 95.5 299 34.1
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 2.3e-17 94.7 425 27.8
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 3.0e-17 94.4 554 26.7
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 3.0e-17 94.4 414 29.5
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 3.9e-17 94.0 657 26.3
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 1.5e-16 92.0 249 35.3
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 1.9e-16 91.7 584 25.3
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 4.3e-16 90.5 528 27.7
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.6e-15 88.6 605 27.6
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.6e-15 88.6 550 26.7
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 1.6e-15 88.6 558 25.1
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 2.8e-15 87.8 299 29.1
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.4e-14 84.7 276 30.4
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 9.0e-14 82.8 201 35.3
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.2e-13 82.4 535 25.0
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 1.5e-13 82.0 523 24.9
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 2.0e-13 81.6 230 33.5
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 2.6e-13 81.3 419 27.4
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 2.6e-13 81.3 604 25.2
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.7e-12 78.6 150 35.3
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 2.2e-12 78.2 384 26.8
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 2.2e-12 78.2 332 27.7
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 2.9e-12 77.8 351 30.8
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 8.4e-12 76.3 215 37.2
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 1.4e-11 75.5 460 28.0
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 7.1e-11 73.2 189 36.0
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 9.3e-11 72.8 293 32.1
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 2.7e-10 71.2 523 24.7
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 7.8e-10 69.7 257 30.7
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.0e-09 69.3 254 29.9
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 2.3e-09 68.2 211 30.3
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 3.0e-09 67.8 332 25.3
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 3.9e-09 67.4 151 37.1
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 3.9e-09 67.4 119 35.3
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 5.1e-09 67.0 175 31.4
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 1.1e-08 65.9 151 36.4
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 1.5e-08 65.5 119 35.3
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 5.6e-08 63.5 103 39.8
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 5.6e-08 63.5 124 36.3
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 7.3e-08 63.2 220 26.4
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 9.6e-08 62.8 112 36.6
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 9.6e-08 62.8 112 36.6
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 9.6e-08 62.8 112 36.6
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.1e-07 61.6 119 40.3
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 2.1e-07 61.6 491 24.6
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 2.8e-07 61.2 112 36.6
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.8e-07 61.2 353 27.2
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 4.8e-07 60.5 256 27.0
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 4.8e-07 60.5 145 34.5
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 6.2e-07 60.1 147 31.3
SalBow2G2574 Salvia bowleyana HOM05D004189 ORTHO05D004092 8.1e-07 59.7 173 32.4
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 1.8e-06 58.5 153 34.0
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 3.1e-06 57.8 84 44.0
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 4.0e-06 57.4 114 36.0
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 5.3e-06 57.0 124 34.7
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 5.3e-06 57.0 124 34.7
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 5.3e-06 57.0 124 34.7
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 5.3e-06 57.0 89 41.6
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 5.3e-06 57.0 131 32.8
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 6.9e-06 56.6 132 36.4
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 6.9e-06 56.6 104 37.5
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 6.9e-06 56.6 97 36.1
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 9.0e-06 56.2 134 30.6


User provided reference genes

Program Settings